| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755974
Identifier: 170755974
GI number: 170755974
Start: 624913
End: 625497
Strand: Direct
Name: 170755974
Synonym: CLD_0241
Alternate gene names: NA
Gene position: 624913-625497 (Clockwise)
Preceding gene: 170754681
Following gene: 170756614
Centisome position: 15.79
GC content: 25.47
Gene sequence:
>585_bases ATGTATAAATTAAGTAGTTTATCAACAAACACCTTGAAAATATCAAAGGATGAAAAATTAGATTTAGAAATATTTTTACA TAGTAAGAGAGTTGCTATATATGTAAAAAAAATTGCAAAGTTGATGAAGCTTAGTTCAAAACAAAGTAATGATTTAGTTC TATTAGCATTAAATCATGATATAGGTAAGGCTAGAATACCCTCTAATATATTAAACAAAAAAGATAAATTAAGTCATAGT GAATTCGAAATTGTAAAAAGACATACTCAGTTTGGTGCAGATATATTAATGGAATATGGATATTGTTTAGAAATTTGTAA TGTTGTAAAATTTCATCATGAAAATTTTGATGGCAGTGGCTATTATGGATTAAAAGGAAAATCTATTCCTATGGCGGCCA GAATACTTCGTATAGCAGATGTATACGAGGCTTTAACTACTGATAGATGCTATAGAAGGGCTTATACAAGAGAAGCAGCT TTAGAGATTATGGTAAAAGAAGAAAATTTATATGATCCTAAAATATTGGAATTATTTATTAAAAAAATATATATAAATTC TTTTAATTTACAATTATGTATATAA
Upstream 100 bases:
>100_bases TATTTAGCTAGATATAGCCAACATAATTAGTTTAAATATGTAAACTAATTATGTTGGCTTTTGTTTTTATAAATTTATAG GGATGGGGAGGAGTAATAAT
Downstream 100 bases:
>100_bases TTAGTCAGTAATTATATATAACGAGGAGGAAATTTATGAAGTTTAAATTTAAAAATACTAAGGATAAAAATTTTATAAGT GTAAAAAGTGTTATAAATAT
Product: HDIG domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MYKLSSLSTNTLKISKDEKLDLEIFLHSKRVAIYVKKIAKLMKLSSKQSNDLVLLALNHDIGKARIPSNILNKKDKLSHS EFEIVKRHTQFGADILMEYGYCLEICNVVKFHHENFDGSGYYGLKGKSIPMAARILRIADVYEALTTDRCYRRAYTREAA LEIMVKEENLYDPKILELFIKKIYINSFNLQLCI
Sequences:
>Translated_194_residues MYKLSSLSTNTLKISKDEKLDLEIFLHSKRVAIYVKKIAKLMKLSSKQSNDLVLLALNHDIGKARIPSNILNKKDKLSHS EFEIVKRHTQFGADILMEYGYCLEICNVVKFHHENFDGSGYYGLKGKSIPMAARILRIADVYEALTTDRCYRRAYTREAA LEIMVKEENLYDPKILELFIKKIYINSFNLQLCI >Mature_194_residues MYKLSSLSTNTLKISKDEKLDLEIFLHSKRVAIYVKKIAKLMKLSSKQSNDLVLLALNHDIGKARIPSNILNKKDKLSHS EFEIVKRHTQFGADILMEYGYCLEICNVVKFHHENFDGSGYYGLKGKSIPMAARILRIADVYEALTTDRCYRRAYTREAA LEIMVKEENLYDPKILELFIKKIYINSFNLQLCI
Specific function: Unknown
COG id: COG2206
COG function: function code T; HD-GYP domain
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR003607 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22457; Mature: 22457
Theoretical pI: Translated: 9.53; Mature: 9.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYKLSSLSTNTLKISKDEKLDLEIFLHSKRVAIYVKKIAKLMKLSSKQSNDLVLLALNHD CCCCCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC IGKARIPSNILNKKDKLSHSEFEIVKRHTQFGADILMEYGYCLEICNVVKFHHENFDGSG CCCCCCCHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC YYGLKGKSIPMAARILRIADVYEALTTDRCYRRAYTREAALEIMVKEENLYDPKILELFI EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH KKIYINSFNLQLCI HHHHHCCCEEEEEC >Mature Secondary Structure MYKLSSLSTNTLKISKDEKLDLEIFLHSKRVAIYVKKIAKLMKLSSKQSNDLVLLALNHD CCCCCCCCCCEEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCC IGKARIPSNILNKKDKLSHSEFEIVKRHTQFGADILMEYGYCLEICNVVKFHHENFDGSG CCCCCCCHHHHCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC YYGLKGKSIPMAARILRIADVYEALTTDRCYRRAYTREAALEIMVKEENLYDPKILELFI EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHH KKIYINSFNLQLCI HHHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9537320 [H]