Click here to switch to the map view.

The map label for this gene is stc [H]

Identifier: 170755775

GI number: 170755775

Start: 3151282

End: 3153180

Strand: Reverse

Name: stc [H]

Synonym: CLD_1637

Alternate gene names: 170755775

Gene position: 3153180-3151282 (Counterclockwise)

Preceding gene: 170755772

Following gene: 170754746

Centisome position: 79.66

GC content: 27.44

Gene sequence:

>1899_bases
ATGTATAATCATGATGAAATAATAAGAAGCTCTCACAATAGATGCATGAAATATGGTATAAAAAAAGAAAAAATTTTTCC
TACTACAATTATTAAAGGAGATAAATTAAAATTATTACTGAAAAAAAACAATGAACTAATAAAGGTTGCAAATCCCTTTA
TAAAAATACTTTATGATTTTTTAAAAGGATCTGGATTTGCATTATATCTTACAGATAAAAAAGGTTTTCCACTTATAATT
ATAGGGGATGAAGATATAATAAGAGATATGACAGAGATGGGAATTGTGGAAGGGGCCGATATGAGTGAAGAAAGTACAGG
TACTAATGCCATAGGCACTGCTATCAAAGAAAATTGTTCTCTTCAAATTTCAGGCGATGAGCACTATATATATGTTTATA
ATGTGTGGACATGCTCTGCTGCTATTATCCACAACGAAGAAGGAAATATAATTGGATGCCTTAATTTAACTGGAAGACGT
CAATTGGTTCATCCTCATTCATTAGGACTAGTTGTAGCAGCTGTAAAGTCTATTGAAAATCAATTAGAGGCAGAGAAATC
TCAAAATGAACTTTTTAAAACATATCAATATTTAAATAAGGTTATAGATTCCATAAATTCAGGAATCTTTGCTGTAGACA
CGAATGGGTTAATAAAAGCCATAAATAATAGTGCATGTGTCATGTTGAATATTAAAAAAGAAAATATTATAAATGAGAGT
GTACAAAATATTTTATGCAATTGGGAATATATATTAGATACACTTAACAGTGGAAAAAGATATGAAGATAAAGAGATTAT
ATATTCAAATATTAATAAAAAGAAAAGATTTAATTTAACAGCTTATTCTATAAGAAATAAAAATGGAATTATAACAGGAG
TAGTAGTAATGTTTAAAGATATGATGAATGTATATAATTTGGTTAATAAATATACAGGAATGATTGCTACCTATACTTTT
GATGACATAGTTGGTAAAAGTGAAAAATTTATAAAAGTAATGAGACAAGCTAAAAAAATATCTAATAGTCCTTCTACAGT
TCTTATTCAAGGGGAAAGCGGAACGGGTAAAGAACTCATTGCTCATTCAATACATAATAATAGCAATAGAAAAAATAATA
GTTTTGTAGCTATAAATTGTGGAGCTATACCAAAGAGTTTAATAGAAAGTGAACTCTTTGGCTATGAAGAAGGTGCCTTT
ACTGGTGCTAAACGTGGTGGATATGCAGGAAAATTTGAGCTTGCTAGCGGAGGTACTTTGTTTTTAGATGAAATAGGGGA
AATGCCATTAGATATGCAGGTGAATCTTTTAAGAGTACTTCAAGAAGGTTTTTTTACAAGAATAGGCGGAAATAGATATA
TAAATATAGATGTAAGAATAATTGCTGCTACAAATAAAGATTTAAAAGCTGAGGTTAAAAAAGGCACTTTTAGAGAGGAT
TTATATTATAGATTAAGTGTAATTCCTATATGTGTTCCACCATTAAGAGAAAGACCAGAAGATATTGAAATACTTATAGA
ACATTTTTTAAATACTAAATCCATAAAATTAAATAAGGCTATACTTAATATAGAGAGTGATATATATGAAGAACTTATAA
ATTACAGTTGGCCAGGAAATGTTAGAGAAATAGAAAATTGTATTGAAAATATAGTAAATATGGATGGAAATGTTTCTTTA
AATTTTGAAACAAAATTTTTTGATAAGCAACAACAAAATTTAAACAGAAACAATTTAGAACTTGAATTGTGTTCCTTAGC
CCAATTAGAAAAGAAAGCAATAATAAATTGTATACAAAAATGCAATGGTAATGTCACCAAAATTTCCAAGATTTTAGGTA
TAAATAGAAGTACTTTATATTCAAAAATAAAAAAATACAATATAATTTTGAAAAGATAA

Upstream 100 bases:

>100_bases
TTTGTGTTATAGTAAATGTATATTTAATTTAATACTTATAAATTTATAGTACAATTATTAATAAATTATTTATAGCTATG
AGGAGGGTTTAAAGGATAAA

Downstream 100 bases:

>100_bases
AGCTTAATATAAAAATAGTGTTTAAAAAAACAACAATGTTGTTAAATGCAACAATATTTTAAATGAAAAACTGTTGTTTT
TTTGAACAAATTTTATATAT

Product: sigma-54 dependent trancsriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 632; Mature: 632

Protein sequence:

>632_residues
MYNHDEIIRSSHNRCMKYGIKKEKIFPTTIIKGDKLKLLLKKNNELIKVANPFIKILYDFLKGSGFALYLTDKKGFPLII
IGDEDIIRDMTEMGIVEGADMSEESTGTNAIGTAIKENCSLQISGDEHYIYVYNVWTCSAAIIHNEEGNIIGCLNLTGRR
QLVHPHSLGLVVAAVKSIENQLEAEKSQNELFKTYQYLNKVIDSINSGIFAVDTNGLIKAINNSACVMLNIKKENIINES
VQNILCNWEYILDTLNSGKRYEDKEIIYSNINKKKRFNLTAYSIRNKNGIITGVVVMFKDMMNVYNLVNKYTGMIATYTF
DDIVGKSEKFIKVMRQAKKISNSPSTVLIQGESGTGKELIAHSIHNNSNRKNNSFVAINCGAIPKSLIESELFGYEEGAF
TGAKRGGYAGKFELASGGTLFLDEIGEMPLDMQVNLLRVLQEGFFTRIGGNRYINIDVRIIAATNKDLKAEVKKGTFRED
LYYRLSVIPICVPPLRERPEDIEILIEHFLNTKSIKLNKAILNIESDIYEELINYSWPGNVREIENCIENIVNMDGNVSL
NFETKFFDKQQQNLNRNNLELELCSLAQLEKKAIINCIQKCNGNVTKISKILGINRSTLYSKIKKYNIILKR

Sequences:

>Translated_632_residues
MYNHDEIIRSSHNRCMKYGIKKEKIFPTTIIKGDKLKLLLKKNNELIKVANPFIKILYDFLKGSGFALYLTDKKGFPLII
IGDEDIIRDMTEMGIVEGADMSEESTGTNAIGTAIKENCSLQISGDEHYIYVYNVWTCSAAIIHNEEGNIIGCLNLTGRR
QLVHPHSLGLVVAAVKSIENQLEAEKSQNELFKTYQYLNKVIDSINSGIFAVDTNGLIKAINNSACVMLNIKKENIINES
VQNILCNWEYILDTLNSGKRYEDKEIIYSNINKKKRFNLTAYSIRNKNGIITGVVVMFKDMMNVYNLVNKYTGMIATYTF
DDIVGKSEKFIKVMRQAKKISNSPSTVLIQGESGTGKELIAHSIHNNSNRKNNSFVAINCGAIPKSLIESELFGYEEGAF
TGAKRGGYAGKFELASGGTLFLDEIGEMPLDMQVNLLRVLQEGFFTRIGGNRYINIDVRIIAATNKDLKAEVKKGTFRED
LYYRLSVIPICVPPLRERPEDIEILIEHFLNTKSIKLNKAILNIESDIYEELINYSWPGNVREIENCIENIVNMDGNVSL
NFETKFFDKQQQNLNRNNLELELCSLAQLEKKAIINCIQKCNGNVTKISKILGINRSTLYSKIKKYNIILKR
>Mature_632_residues
MYNHDEIIRSSHNRCMKYGIKKEKIFPTTIIKGDKLKLLLKKNNELIKVANPFIKILYDFLKGSGFALYLTDKKGFPLII
IGDEDIIRDMTEMGIVEGADMSEESTGTNAIGTAIKENCSLQISGDEHYIYVYNVWTCSAAIIHNEEGNIIGCLNLTGRR
QLVHPHSLGLVVAAVKSIENQLEAEKSQNELFKTYQYLNKVIDSINSGIFAVDTNGLIKAINNSACVMLNIKKENIINES
VQNILCNWEYILDTLNSGKRYEDKEIIYSNINKKKRFNLTAYSIRNKNGIITGVVVMFKDMMNVYNLVNKYTGMIATYTF
DDIVGKSEKFIKVMRQAKKISNSPSTVLIQGESGTGKELIAHSIHNNSNRKNNSFVAINCGAIPKSLIESELFGYEEGAF
TGAKRGGYAGKFELASGGTLFLDEIGEMPLDMQVNLLRVLQEGFFTRIGGNRYINIDVRIIAATNKDLKAEVKKGTFRED
LYYRLSVIPICVPPLRERPEDIEILIEHFLNTKSIKLNKAILNIESDIYEELINYSWPGNVREIENCIENIVNMDGNVSL
NFETKFFDKQQQNLNRNNLELELCSLAQLEKKAIINCIQKCNGNVTKISKILGINRSTLYSKIKKYNIILKR

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3284

COG function: function code QK; Transcriptional activator of acetoin/glycerol metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=329, Percent_Identity=44.0729483282675, Blast_Score=274, Evalue=1e-74,
Organism=Escherichia coli, GI87082117, Length=325, Percent_Identity=44.3076923076923, Blast_Score=273, Evalue=3e-74,
Organism=Escherichia coli, GI1789087, Length=314, Percent_Identity=46.1783439490446, Blast_Score=268, Evalue=7e-73,
Organism=Escherichia coli, GI1789233, Length=454, Percent_Identity=35.6828193832599, Blast_Score=265, Evalue=7e-72,
Organism=Escherichia coli, GI1790437, Length=309, Percent_Identity=43.042071197411, Blast_Score=255, Evalue=5e-69,
Organism=Escherichia coli, GI1786524, Length=347, Percent_Identity=38.9048991354467, Blast_Score=255, Evalue=7e-69,
Organism=Escherichia coli, GI1790299, Length=336, Percent_Identity=40.4761904761905, Blast_Score=252, Evalue=6e-68,
Organism=Escherichia coli, GI1788905, Length=308, Percent_Identity=42.2077922077922, Blast_Score=248, Evalue=1e-66,
Organism=Escherichia coli, GI87081858, Length=632, Percent_Identity=25.4746835443038, Blast_Score=226, Evalue=5e-60,
Organism=Escherichia coli, GI1787583, Length=427, Percent_Identity=29.2740046838407, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87082152, Length=230, Percent_Identity=46.9565217391304, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87081872, Length=322, Percent_Identity=36.6459627329193, Blast_Score=212, Evalue=7e-56,
Organism=Escherichia coli, GI1789828, Length=255, Percent_Identity=32.156862745098, Blast_Score=131, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 71505; Mature: 71505

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS50112 PAS ; PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNHDEIIRSSHNRCMKYGIKKEKIFPTTIIKGDKLKLLLKKNNELIKVANPFIKILYDF
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEHHHHHHHHHHH
LKGSGFALYLTDKKGFPLIIIGDEDIIRDMTEMGIVEGADMSEESTGTNAIGTAIKENCS
HCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCE
LQISGDEHYIYVYNVWTCSAAIIHNEEGNIIGCLNLTGRRQLVHPHSLGLVVAAVKSIEN
EEECCCCEEEEEEEEEEEEEEEEECCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHH
QLEAEKSQNELFKTYQYLNKVIDSINSGIFAVDTNGLIKAINNSACVMLNIKKENIINES
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHEEECCCEEEEEEECHHHHHHHH
VQNILCNWEYILDTLNSGKRYEDKEIIYSNINKKKRFNLTAYSIRNKNGIITGVVVMFKD
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHHHHH
MMNVYNLVNKYTGMIATYTFDDIVGKSEKFIKVMRQAKKISNSPSTVLIQGESGTGKELI
HHHHHHHHHHHCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
AHSIHNNSNRKNNSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGYAGKFELASGGTL
HHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEE
FLDEIGEMPLDMQVNLLRVLQEGFFTRIGGNRYINIDVRIIAATNKDLKAEVKKGTFRED
EHHHHCCCCCCCHHHHHHHHHHHHHEEECCCEEEEEEEEEEEECCCCHHHHHHCCCHHHH
LYYRLSVIPICVPPLRERPEDIEILIEHFLNTKSIKLNKAILNIESDIYEELINYSWPGN
HHEEEEEEEEECCHHHCCCHHHHHHHHHHCCCCCEEEEHHEEECHHHHHHHHHCCCCCCC
VREIENCIENIVNMDGNVSLNFETKFFDKQQQNLNRNNLELELCSLAQLEKKAIINCIQK
HHHHHHHHHHHHCCCCCEEEEEEHHHHCHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHH
CNGNVTKISKILGINRSTLYSKIKKYNIILKR
HCCCHHHHHHHHCCCHHHHHHHHHHHEEEEEC
>Mature Secondary Structure
MYNHDEIIRSSHNRCMKYGIKKEKIFPTTIIKGDKLKLLLKKNNELIKVANPFIKILYDF
CCCHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEEEEECCCCEEEEHHHHHHHHHHH
LKGSGFALYLTDKKGFPLIIIGDEDIIRDMTEMGIVEGADMSEESTGTNAIGTAIKENCS
HCCCCEEEEEECCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCE
LQISGDEHYIYVYNVWTCSAAIIHNEEGNIIGCLNLTGRRQLVHPHSLGLVVAAVKSIEN
EEECCCCEEEEEEEEEEEEEEEEECCCCCEEEEEECCCCCEECCCCHHHHHHHHHHHHHH
QLEAEKSQNELFKTYQYLNKVIDSINSGIFAVDTNGLIKAINNSACVMLNIKKENIINES
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHEEECCCEEEEEEECHHHHHHHH
VQNILCNWEYILDTLNSGKRYEDKEIIYSNINKKKRFNLTAYSIRNKNGIITGVVVMFKD
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEEEEEEECCCCCHHHHHHHHHH
MMNVYNLVNKYTGMIATYTFDDIVGKSEKFIKVMRQAKKISNSPSTVLIQGESGTGKELI
HHHHHHHHHHHCCEEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
AHSIHNNSNRKNNSFVAINCGAIPKSLIESELFGYEEGAFTGAKRGGYAGKFELASGGTL
HHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCEE
FLDEIGEMPLDMQVNLLRVLQEGFFTRIGGNRYINIDVRIIAATNKDLKAEVKKGTFRED
EHHHHCCCCCCCHHHHHHHHHHHHHEEECCCEEEEEEEEEEEECCCCHHHHHHCCCHHHH
LYYRLSVIPICVPPLRERPEDIEILIEHFLNTKSIKLNKAILNIESDIYEELINYSWPGN
HHEEEEEEEEECCHHHCCCHHHHHHHHHHCCCCCEEEEHHEEECHHHHHHHHHCCCCCCC
VREIENCIENIVNMDGNVSLNFETKFFDKQQQNLNRNNLELELCSLAQLEKKAIINCIQK
HHHHHHHHHHHHCCCCCEEEEEEHHHHCHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHH
CNGNVTKISKILGINRSTLYSKIKKYNIILKR
HCCCHHHHHHHHCCCHHHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA