| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755770
Identifier: 170755770
GI number: 170755770
Start: 3278266
End: 3279615
Strand: Reverse
Name: 170755770
Synonym: CLD_1516
Alternate gene names: NA
Gene position: 3279615-3278266 (Counterclockwise)
Preceding gene: 170756763
Following gene: 170754688
Centisome position: 82.86
GC content: 28.07
Gene sequence:
>1350_bases ATGGGATTACCTTCCTATGTAGTCAACTTTGATGAACTATCAGATCTTATTAAAGATTATTTACAAAATGGTGTGAAAGT TGACATAGGCAATATAAACTTTTCTACCAAAGATATGGAAAATTTATTATCAGAAATTAAAGATAAAATACAAGGTGTAG ATTATAATGATTTAATAAATGCGTTAAATGCTTTAGGGGTAAAGTTAGATAATTTAAGTGGAAATTTAGGTATATCAGGC ACACAGAAAATTTATGGGAAAATGCTAGAGATTCCTGCAGTAAAAGGACAACATATAATAGAATTTAAGGGAAATGGACA AATAACAGGTATAACATATTCTCAATCTAGTTGGAGATTTGAAGATAGCTGGGATTTACAAGTAGGTAATGATAAATTAT TTGAAAGTGTACGCACTAAAGAATATGGTGAACATAAATTTTTAAATGTATTTTATCCTGTAAATGGTACAGTCAAATTT ATTTACAATAATATTAGTGGAACTAGTAAAGTTTTATGGGTAGATTTTAATATATTAGAAAATAGTAATTTACCTATATC TACTATACCTACTATACCTACCACTAGTGAAAAAAACTATAGATTTTTAGCTATAGGAGAAAGTGAATATACCTTACAAG GCGCTAATAACCTTATGGGTTGCACATATGATGCTGACAATATGTCTAATTTATTTAAGGAGCATAAAGAAAGTGCTAAA TTTACAAAAAATATAGTTGCAAAAAATAAGACTAAATCAGAAGCATTAAATTTAATAAAAAGCACTTTTAAGGATGCAGA AGAGAATGATATTAGTTATTTGTTTTGGTCTGGACATGGTACTGTATATGAAGATAAGTTTGCTTTAGTAGCAAAAGATA ACATAATAACAGTATATGAATTACAAACAATACTGAATGATATAAAAGGTACTAAAGTAATATTTATTGATACTTGCCAC AGTGGACTTGCTATAGATAAAAATTTTGCATATACATTAGCTGTAGTGGAGGAGAAACTTAGAAGTATAGACAAAACATT AAATAAACAAGGATATAAGGTTTTAACAGCTAGTGCAGGTTCAGAAACATCTGGTGACTTGAGCGCTGGATATAATGGAA ATCCTAATCCTTCAGGAGCTTTTACATGGGCATTAACACAAAGCATTAAAACTAAGAAATCTGATAAAGATAAAAATAGA ATTGTAACTTTGGAAGAATTATATCAAAGTGTATTACATTTTTATGATGAATTTAATATTAAGAACCCTTATTTAAAGAT AACACAAACAGCTCAAGTTTATCCAAGAAATGATACAAGTTCAATCTTTGAATATAAAGAAGGTGCTTAA
Upstream 100 bases:
>100_bases AAACAACGTACCCTAATAATACAAATAAAACAATACGATTAATTAAAGATAATCATGGTAAATTAGAAACAATAGATTAT GTATAGGAGGTGGCAATAAT
Downstream 100 bases:
>100_bases TTTGAGCTTACCTAAATATATAATTAATTTTGAAGAGCTTACAGAGGATTTAAAAAATCACTTATTAAGTCTGATAGATG ATAATATAAGAACTAATTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 449; Mature: 448
Protein sequence:
>449_residues MGLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLINALNALGVKLDNLSGNLGISG TQKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRFEDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPVNGTVKF IYNNISGTSKVLWVDFNILENSNLPISTIPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNMSNLFKEHKESAK FTKNIVAKNKTKSEALNLIKSTFKDAEENDISYLFWSGHGTVYEDKFALVAKDNIITVYELQTILNDIKGTKVIFIDTCH SGLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAGSETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNR IVTLEELYQSVLHFYDEFNIKNPYLKITQTAQVYPRNDTSSIFEYKEGA
Sequences:
>Translated_449_residues MGLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLINALNALGVKLDNLSGNLGISG TQKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRFEDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPVNGTVKF IYNNISGTSKVLWVDFNILENSNLPISTIPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNMSNLFKEHKESAK FTKNIVAKNKTKSEALNLIKSTFKDAEENDISYLFWSGHGTVYEDKFALVAKDNIITVYELQTILNDIKGTKVIFIDTCH SGLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAGSETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNR IVTLEELYQSVLHFYDEFNIKNPYLKITQTAQVYPRNDTSSIFEYKEGA >Mature_448_residues GLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLINALNALGVKLDNLSGNLGISGT QKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRFEDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPVNGTVKFI YNNISGTSKVLWVDFNILENSNLPISTIPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNMSNLFKEHKESAKF TKNIVAKNKTKSEALNLIKSTFKDAEENDISYLFWSGHGTVYEDKFALVAKDNIITVYELQTILNDIKGTKVIFIDTCHS GLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAGSETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNRI VTLEELYQSVLHFYDEFNIKNPYLKITQTAQVYPRNDTSSIFEYKEGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50382; Mature: 50251
Theoretical pI: Translated: 5.36; Mature: 5.36
Prosite motif: PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLIN CCCCHHEECHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH ALNALGVKLDNLSGNLGISGTQKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRF HHHHHCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCC EDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPVNGTVKFIYNNISGTSKVLWVDFNILE CCCCCEEECCHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCEEEEEEEEEEE NSNLPISTIPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNMSNLFKEHKESAK CCCCCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHH FTKNIVAKNKTKSEALNLIKSTFKDAEENDISYLFWSGHGTVYEDKFALVAKDNIITVYE HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCEEEEEECCEEEEEE LQTILNDIKGTKVIFIDTCHSGLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAG HHHHHHHCCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC SETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNRIVTLEELYQSVLHFYDEFNI CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCC KNPYLKITQTAQVYPRNDTSSIFEYKEGA CCCEEEEEEEEEEEECCCCHHHHHCCCCC >Mature Secondary Structure GLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLIN CCCHHEECHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH ALNALGVKLDNLSGNLGISGTQKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRF HHHHHCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCEEEEEEECCCCCCC EDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPVNGTVKFIYNNISGTSKVLWVDFNILE CCCCCEEECCHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCEEEEEEEEEEE NSNLPISTIPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNMSNLFKEHKESAK CCCCCEEECCCCCCCCCCCEEEEEECCCCEEEECCCCCEEEEECCHHHHHHHHHHHHHHH FTKNIVAKNKTKSEALNLIKSTFKDAEENDISYLFWSGHGTVYEDKFALVAKDNIITVYE HHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEECCEEEEEECCEEEEEE LQTILNDIKGTKVIFIDTCHSGLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAG HHHHHHHCCCCEEEEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCC SETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNRIVTLEELYQSVLHFYDEFNI CCCCCCCCCCCCCCCCCCCEEEEEEHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHCCC KNPYLKITQTAQVYPRNDTSSIFEYKEGA CCCEEEEEEEEEEEECCCCHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA