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The map label for this gene is rpe

Identifier: 170755632

GI number: 170755632

Start: 2625322

End: 2625972

Strand: Reverse

Name: rpe

Synonym: CLD_2135

Alternate gene names: 170755632

Gene position: 2625972-2625322 (Counterclockwise)

Preceding gene: 170754729

Following gene: 170755202

Centisome position: 66.34

GC content: 30.57

Gene sequence:

>651_bases
ATGGTAAAAATAGCGCCATCAATACTTTCAGCAGACTTTTCTAAACTAGGGGAGGACATAAAAAATCTAGATAAATATGG
GGCAGATGTTATACATATAGATGTAATGGATGGTAGATTTGTTCCTAATATTTCTTTTGGAATTCCAATAATTAAAAGTA
TAAGAAATCTAACAGACAAACCTTTTGATGTGCATCTTATGATAGAAGAACCTTCTAAATACATAGAAGATTTTGTAAAG
GCAGGAGCAGATATAATATCAGTCCATTATGAAGCAGATAAACATATAGACAGAACAATAAATTATATAAAAAGTCTTGG
AATAAAGGCAGCTGTGGCTTTAAATCCAGGTACATCTGTAAGCTGTATTAAGGATTTAATACCTTCTTTGGATATGGTGC
TTATTATGTCTGTAAATCCAGGTTTCGGAGGACAAAAATATATTAAATATGCTTCAGAAAAAATAAAGGAAGTTAAGGCT
TTAAGTGAAAAATATAATAAGGATTTAATAATAGAAGTAGATGGAGGGGTTACTAAAGACAATATAAAGAAAATAGCAGA
TTGTGGTGCCGATCTTTTAGTAGCAGGTTCAGCAGTATTTAAAAATGGAGAGATAGAAAAAAATATAAAGGTGTTAAGAG
AGGCATTATAA

Upstream 100 bases:

>100_bases
GTGCAGTAAAAAAAGCAGTAGAGGAAGGCCATATACACAAAAATAGATATGATTTTTATATAAAAACTTTAGAAGAATTT
ATGAATAGGAGGAAGAAAAA

Downstream 100 bases:

>100_bases
AATGAAAGCTATAGTAATAGGAGGAGGAGAAGCACCTTCCAAGGAGCTTTTGAAGCAAGAAATGAAGGATTCTTCTTATA
TAATATGTGCAGATAGTGGT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDKPFDVHLMIEEPSKYIEDFVK
AGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSVSCIKDLIPSLDMVLIMSVNPGFGGQKYIKYASEKIKEVKA
LSEKYNKDLIIEVDGGVTKDNIKKIADCGADLLVAGSAVFKNGEIEKNIKVLREAL

Sequences:

>Translated_216_residues
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDKPFDVHLMIEEPSKYIEDFVK
AGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSVSCIKDLIPSLDMVLIMSVNPGFGGQKYIKYASEKIKEVKA
LSEKYNKDLIIEVDGGVTKDNIKKIADCGADLLVAGSAVFKNGEIEKNIKVLREAL
>Mature_216_residues
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDKPFDVHLMIEEPSKYIEDFVK
AGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSVSCIKDLIPSLDMVLIMSVNPGFGGQKYIKYASEKIKEVKA
LSEKYNKDLIIEVDGGVTKDNIKKIADCGADLLVAGSAVFKNGEIEKNIKVLREAL

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=39.7196261682243, Blast_Score=167, Evalue=7e-42,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=38.3177570093458, Blast_Score=157, Evalue=8e-39,
Organism=Homo sapiens, GI24307923, Length=168, Percent_Identity=31.547619047619, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI1789788, Length=214, Percent_Identity=47.196261682243, Blast_Score=200, Evalue=8e-53,
Organism=Escherichia coli, GI1790523, Length=205, Percent_Identity=37.0731707317073, Blast_Score=147, Evalue=6e-37,
Organism=Escherichia coli, GI1790754, Length=206, Percent_Identity=26.6990291262136, Blast_Score=100, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=218, Percent_Identity=41.743119266055, Blast_Score=174, Evalue=3e-44,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=44.1048034934498, Blast_Score=193, Evalue=2e-50,
Organism=Drosophila melanogaster, GI24586301, Length=215, Percent_Identity=39.5348837209302, Blast_Score=164, Evalue=4e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23694; Mature: 23694

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDK
CCEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCCHHHHHHHHCCCC
PFDVHLMIEEPSKYIEDFVKAGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSV
CCEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCH
SCIKDLIPSLDMVLIMSVNPGFGGQKYIKYASEKIKEVKALSEKYNKDLIIEVDGGVTKD
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
NIKKIADCGADLLVAGSAVFKNGEIEKNIKVLREAL
HHHHHHHCCCHHEEECHHHHCCCCHHHHHHHHHHHC
>Mature Secondary Structure
MVKIAPSILSADFSKLGEDIKNLDKYGADVIHIDVMDGRFVPNISFGIPIIKSIRNLTDK
CCEECHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCEECCCCCCCCHHHHHHHHCCCC
PFDVHLMIEEPSKYIEDFVKAGADIISVHYEADKHIDRTINYIKSLGIKAAVALNPGTSV
CCEEEEEEECCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCH
SCIKDLIPSLDMVLIMSVNPGFGGQKYIKYASEKIKEVKALSEKYNKDLIIEVDGGVTKD
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH
NIKKIADCGADLLVAGSAVFKNGEIEKNIKVLREAL
HHHHHHHCCCHHEEECHHHHCCCCHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]