| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is dipZ [H]
Identifier: 170755613
GI number: 170755613
Start: 2941856
End: 2943259
Strand: Reverse
Name: dipZ [H]
Synonym: CLD_1808
Alternate gene names: 170755613
Gene position: 2943259-2941856 (Counterclockwise)
Preceding gene: 170756689
Following gene: 170755730
Centisome position: 74.36
GC content: 28.13
Gene sequence:
>1404_bases ATGAGTAATTTGTATGAAAAGTATAAAAATGCTAGAGTTCATGCCCCTAATTTCCCAATGACTATTGAGTGGCTAGGTGC CAAGAGGACAAATTTGGATAAACTAAAAAATAGAGTTATACTTTTAGATTTTTGGACTTTTTGTTGTATAAATTGCATAC ATGTAATAGAGGATCTAAAATATTTAGAAGAAAAATATAAGAATAAGTTACAGGTCATAGGAGTACATTCTCCTAAATTT AAATACGAAAAGAACAGTAAAGCAATACTAAATGCTATGAAAAAATATGGAATAAATCATCCAGTAGTAAATGATAAAAA TAAAAGCATATGGGATAGCTATACAGTAAATGCATGGCCAACATTTATATTAATAGATCCAGAGGGATATGCTTTTACTA TGGTATCAGGAGAAGGTAATAGAGAACTATTGGACCAAATAATAGGTGATACAATAGAATACTTTGATAATATAAATTGG CCAGATGAAAATATAATTTTAGAAAATAAATGCGAAAAAGAAGAATATATGTATCCATCTAAAATATCCATAAATGAAGA TGGATTAATAGCCTTTTCAGAAAAAGGTAAAAATAGAATAGTAATATTAGACCAAAACTTAGAAAAAATAAAAACAATAG GCAGTAGTAAATATGGATTAAAAGACGGAGATTTTAAAGAGGCTCAATTTAAAGCTCCAGAGGGGTTAAGATTTATAGAA AATAAGATCTATGTTGCAGATACTGAAAACCATTTCATAAGGGAATGCGATTTGGAAAAGGAAATAGTTAAAACTATAGC AGGTAATGGACAAAAGGAATATAGTCCTATGGCAAAGGGGGATGCTTTAAATGTAAGCTTAAATTCTCCTTGGGATCTAG AAATATTAAAAGACTGTATATATATAGCTATGGCAGGAAATCATCAAATATGGAAATACAATATGAAAGATAAAAGTATA GAAAGTCATATAGGTACAGGGGGAGAAAACATAAGGGATGGAAGTTTTGATAAATGCTTATTAGCACAGACTTCAGCTTT ATGCTATGATGGTAAGAAAAAATTATATTTTGTAGATTCAGAAACAAGTTCTATAAGATATGCAGATTTAGAAGAGAATA AAGTCCATACACTTATAGGGAAAGGATTGTTTTATTTTGGAAACAAGGTAGGAAGTTTTGAAAATACCATGCTTCAACAT CCTTTAGATTTAAAATATAAAGACAATATATTATATATAGCAGACACCTATAACAATAGAATAGTAAAAGCAGACATTTT AAATAAAAAAGTAGAAATAATAAAAAGAGGATTAAATGAGCCAAATGGAATAGCAATATATGAAGATAGTATATATATAT GTAATACAAACGATGGTAAAATCGAAAAAATAAGCATAAAATAA
Upstream 100 bases:
>100_bases AAAGAATGTGAAAATAAATATATATATAATAATATACTATATAATAAGAATGAGGAAATTTGAGAGGAGGGAATAAGGAT AGGATTATCCTTATAAATAT
Downstream 100 bases:
>100_bases TGGGTTGTCTCAAAAATAGATTTAATTTTAATATAGTAAATATAAAAAAATACATGCAATAAGCATATGAATAAGCTTTA GTAGTTCTTAATTTGACGTA
Product: NHL repeat-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 467; Mature: 466
Protein sequence:
>467_residues MSNLYEKYKNARVHAPNFPMTIEWLGAKRTNLDKLKNRVILLDFWTFCCINCIHVIEDLKYLEEKYKNKLQVIGVHSPKF KYEKNSKAILNAMKKYGINHPVVNDKNKSIWDSYTVNAWPTFILIDPEGYAFTMVSGEGNRELLDQIIGDTIEYFDNINW PDENIILENKCEKEEYMYPSKISINEDGLIAFSEKGKNRIVILDQNLEKIKTIGSSKYGLKDGDFKEAQFKAPEGLRFIE NKIYVADTENHFIRECDLEKEIVKTIAGNGQKEYSPMAKGDALNVSLNSPWDLEILKDCIYIAMAGNHQIWKYNMKDKSI ESHIGTGGENIRDGSFDKCLLAQTSALCYDGKKKLYFVDSETSSIRYADLEENKVHTLIGKGLFYFGNKVGSFENTMLQH PLDLKYKDNILYIADTYNNRIVKADILNKKVEIIKRGLNEPNGIAIYEDSIYICNTNDGKIEKISIK
Sequences:
>Translated_467_residues MSNLYEKYKNARVHAPNFPMTIEWLGAKRTNLDKLKNRVILLDFWTFCCINCIHVIEDLKYLEEKYKNKLQVIGVHSPKF KYEKNSKAILNAMKKYGINHPVVNDKNKSIWDSYTVNAWPTFILIDPEGYAFTMVSGEGNRELLDQIIGDTIEYFDNINW PDENIILENKCEKEEYMYPSKISINEDGLIAFSEKGKNRIVILDQNLEKIKTIGSSKYGLKDGDFKEAQFKAPEGLRFIE NKIYVADTENHFIRECDLEKEIVKTIAGNGQKEYSPMAKGDALNVSLNSPWDLEILKDCIYIAMAGNHQIWKYNMKDKSI ESHIGTGGENIRDGSFDKCLLAQTSALCYDGKKKLYFVDSETSSIRYADLEENKVHTLIGKGLFYFGNKVGSFENTMLQH PLDLKYKDNILYIADTYNNRIVKADILNKKVEIIKRGLNEPNGIAIYEDSIYICNTNDGKIEKISIK >Mature_466_residues SNLYEKYKNARVHAPNFPMTIEWLGAKRTNLDKLKNRVILLDFWTFCCINCIHVIEDLKYLEEKYKNKLQVIGVHSPKFK YEKNSKAILNAMKKYGINHPVVNDKNKSIWDSYTVNAWPTFILIDPEGYAFTMVSGEGNRELLDQIIGDTIEYFDNINWP DENIILENKCEKEEYMYPSKISINEDGLIAFSEKGKNRIVILDQNLEKIKTIGSSKYGLKDGDFKEAQFKAPEGLRFIEN KIYVADTENHFIRECDLEKEIVKTIAGNGQKEYSPMAKGDALNVSLNSPWDLEILKDCIYIAMAGNHQIWKYNMKDKSIE SHIGTGGENIRDGSFDKCLLAQTSALCYDGKKKLYFVDSETSSIRYADLEENKVHTLIGKGLFYFGNKVGSFENTMLQHP LDLKYKDNILYIADTYNNRIVKADILNKKVEIIKRGLNEPNGIAIYEDSIYICNTNDGKIEKISIK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI42476013, Length=512, Percent_Identity=32.421875, Blast_Score=259, Evalue=4e-69, Organism=Drosophila melanogaster, GI116007528, Length=504, Percent_Identity=33.1349206349206, Blast_Score=267, Evalue=1e-71,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000866 - InterPro: IPR003834 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00578 AhpC-TSA; PF02683 DsbD [H]
EC number: NA
Molecular weight: Translated: 53724; Mature: 53593
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLYEKYKNARVHAPNFPMTIEWLGAKRTNLDKLKNRVILLDFWTFCCINCIHVIEDLK CCHHHHHHHCCEEECCCCCEEEEECCCCCCCHHHHHCCEEEEEHHHHHHHHHHHHHHHHH YLEEKYKNKLQVIGVHSPKFKYEKNSKAILNAMKKYGINHPVVNDKNKSIWDSYTVNAWP HHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE TFILIDPEGYAFTMVSGEGNRELLDQIIGDTIEYFDNINWPDENIILENKCEKEEYMYPS EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCCCCC KISINEDGLIAFSEKGKNRIVILDQNLEKIKTIGSSKYGLKDGDFKEAQFKAPEGLRFIE EEEECCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEC NKIYVADTENHFIRECDLEKEIVKTIAGNGQKEYSPMAKGDALNVSLNSPWDLEILKDCI CEEEEEECCCCHHHHCCHHHHHHHHHHCCCCHHCCCCCCCCEEEEECCCCCCHHHHHCEE YIAMAGNHQIWKYNMKDKSIESHIGTGGENIRDGSFDKCLLAQTSALCYDGKKKLYFVDS EEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHEEECCCEEEEEEEC ETSSIRYADLEENKVHTLIGKGLFYFGNKVGSFENTMLQHPLDLKYKDNILYIADTYNNR CCCCEEEECCCCCCCHHHHHCCHHHHCCCCCCHHHHHHCCCCCCEECCCEEEEEECCCCE IVKADILNKKVEIIKRGLNEPNGIAIYEDSIYICNTNDGKIEKISIK EEEHHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCCEEEEEEEC >Mature Secondary Structure SNLYEKYKNARVHAPNFPMTIEWLGAKRTNLDKLKNRVILLDFWTFCCINCIHVIEDLK CHHHHHHHCCEEECCCCCEEEEECCCCCCCHHHHHCCEEEEEHHHHHHHHHHHHHHHHH YLEEKYKNKLQVIGVHSPKFKYEKNSKAILNAMKKYGINHPVVNDKNKSIWDSYTVNAWP HHHHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCE TFILIDPEGYAFTMVSGEGNRELLDQIIGDTIEYFDNINWPDENIILENKCEKEEYMYPS EEEEECCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCHHHCCCCC KISINEDGLIAFSEKGKNRIVILDQNLEKIKTIGSSKYGLKDGDFKEAQFKAPEGLRFIE EEEECCCCEEEEECCCCCEEEEECCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEC NKIYVADTENHFIRECDLEKEIVKTIAGNGQKEYSPMAKGDALNVSLNSPWDLEILKDCI CEEEEEECCCCHHHHCCHHHHHHHHHHCCCCHHCCCCCCCCEEEEECCCCCCHHHHHCEE YIAMAGNHQIWKYNMKDKSIESHIGTGGENIRDGSFDKCLLAQTSALCYDGKKKLYFVDS EEEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHHEEECCCEEEEEEEC ETSSIRYADLEENKVHTLIGKGLFYFGNKVGSFENTMLQHPLDLKYKDNILYIADTYNNR CCCCEEEECCCCCCCHHHHHCCHHHHCCCCCCHHHHHHCCCCCCEECCCEEEEEECCCCE IVKADILNKKVEIIKRGLNEPNGIAIYEDSIYICNTNDGKIEKISIK EEEHHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]