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The map label for this gene is hemZ [H]

Identifier: 170755567

GI number: 170755567

Start: 3300472

End: 3301902

Strand: Reverse

Name: hemZ [H]

Synonym: CLD_1484

Alternate gene names: 170755567

Gene position: 3301902-3300472 (Counterclockwise)

Preceding gene: 170755686

Following gene: 170754518

Centisome position: 83.42

GC content: 26.14

Gene sequence:

>1431_bases
ATGAAGCTGAAAATAAATTTAAATGATATGCAGTATAGATACGATGTATATCAAATATTAAATATATATTATAATTTTTA
TGATATCACATTTGTTAATGAAGATTATGATATGAAAATAGAAATAACTGATGAAGGAATGTATATAAAAAAAGAAGATG
AAAAAATAGAATATGAAAAAGATACTAATTTAGCTAAAAAAGAATGGGTAAAAAAATTTCTTTTTTTATATTTAAAATCA
ATTACTAATAAAAATTTACCTTGGGGGACTTTAGTAGGAATAAGACCAAGTAAGATAGCTTTAGATTTAATGAATAAAGG
AATGGGAGAAAAAGAAATAATAGATTGGTTTAGTAAGCATCGTAATACTAGAGCTGATAAAACTAAATTATGTATAGATA
TCGCTAATATGGAGAAATCCATTGTAAATAAGGATCAAAATACTATAAGTGTATATGTAGGTATGCCGTTTTGTCCAACT
AGATGTCTATATTGTTCTTTTACATCAAATCCGATAGGCAAGTGTAAGAACTTAGTGGAGCCTTATTTAAAGGCTCTTTA
TTATGAAATGGATATGCTTTCAAAATATATACAACATAGGAGCTTAAAAATACAATGTGTTTATTTTGGAGGAGGAACAC
CAACTTCTGTTAATGATGCTCAGTTTGAAAAAACATTAAATAAAATATATTATAATTTTGTACATAATAAAGAAGTAGAA
GAATTTACAGTGGAATGCGGAAGACCGGATAGTATTACAGAGGAAAAATTACTGTCAATGAAGAAATATAATGTAGATAG
AATAAGCATAAATCCACAAACGATGAATAATAGTACTTTAAAAAATATAGGGAGAACCCACTCTGTAGAAGATATAGAAA
GAATTTATTACTTAGCTAAGAGCATAGGATTTAAGAATATAAACATGGATTTAATAGTAGGTCTTCCAGGTGAGGGAATA
GAGGAAATAAAGAATACTTGCAGAAAGATTAAAAAATTAAATCCTGATAATATAACAGTTCATGGTATGTCAATAAAAAG
AGGTTCTATACTTCATGAAAAGTTAGTTAACAAAATGGAATTTAATATTCCTAAACAGGAAGAATTAAATAAAATGTATG
AAGAAACTGAAGCTTTAGCTAAAGATTTAGGCATAAAGCCTTATTATATGTATAGACAAAAAAATATGTTGGGAAACATG
GAAAACGTAGGATATTCAAAAGAAAATAAAATAGGTATATATAATATACAAATGATAGAAGAAAGGCAAACCATAATAGC
CTTAGGAGCAGATGCTGTATCTAAAATAATATTTATGGATGAAAATAGGATTGAAAGATCACCTAATGTTAAGGATGTAA
TAGAATATACAAAAAGAGTGGAAGAAATGGTACATAGAAAGAAAAAAATATTAGATACTTTATATTTATAA

Upstream 100 bases:

>100_bases
TTACCAGGTCATGGTCCACAATCTACAATAGGCTATGAAAAAAATAATAATCCATTTTTTTAAATAGATATATCCCTTGA
AAAGCATTGGAGTGCATAAT

Downstream 100 bases:

>100_bases
TGGTTAGGAGGAATATAAATGTCATTGCAAGCGCCAAAAGGTACAAAAGATTTATTGCCTACAGAATCATATAAGTGGCA
ATATTTAGAGAATAAATTTA

Product: coproporphyrinogen III oxidase

Products: NA

Alternate protein names: Coprogen oxidase; Coproporphyrinogenase [H]

Number of amino acids: Translated: 476; Mature: 476

Protein sequence:

>476_residues
MKLKINLNDMQYRYDVYQILNIYYNFYDITFVNEDYDMKIEITDEGMYIKKEDEKIEYEKDTNLAKKEWVKKFLFLYLKS
ITNKNLPWGTLVGIRPSKIALDLMNKGMGEKEIIDWFSKHRNTRADKTKLCIDIANMEKSIVNKDQNTISVYVGMPFCPT
RCLYCSFTSNPIGKCKNLVEPYLKALYYEMDMLSKYIQHRSLKIQCVYFGGGTPTSVNDAQFEKTLNKIYYNFVHNKEVE
EFTVECGRPDSITEEKLLSMKKYNVDRISINPQTMNNSTLKNIGRTHSVEDIERIYYLAKSIGFKNINMDLIVGLPGEGI
EEIKNTCRKIKKLNPDNITVHGMSIKRGSILHEKLVNKMEFNIPKQEELNKMYEETEALAKDLGIKPYYMYRQKNMLGNM
ENVGYSKENKIGIYNIQMIEERQTIIALGADAVSKIIFMDENRIERSPNVKDVIEYTKRVEEMVHRKKKILDTLYL

Sequences:

>Translated_476_residues
MKLKINLNDMQYRYDVYQILNIYYNFYDITFVNEDYDMKIEITDEGMYIKKEDEKIEYEKDTNLAKKEWVKKFLFLYLKS
ITNKNLPWGTLVGIRPSKIALDLMNKGMGEKEIIDWFSKHRNTRADKTKLCIDIANMEKSIVNKDQNTISVYVGMPFCPT
RCLYCSFTSNPIGKCKNLVEPYLKALYYEMDMLSKYIQHRSLKIQCVYFGGGTPTSVNDAQFEKTLNKIYYNFVHNKEVE
EFTVECGRPDSITEEKLLSMKKYNVDRISINPQTMNNSTLKNIGRTHSVEDIERIYYLAKSIGFKNINMDLIVGLPGEGI
EEIKNTCRKIKKLNPDNITVHGMSIKRGSILHEKLVNKMEFNIPKQEELNKMYEETEALAKDLGIKPYYMYRQKNMLGNM
ENVGYSKENKIGIYNIQMIEERQTIIALGADAVSKIIFMDENRIERSPNVKDVIEYTKRVEEMVHRKKKILDTLYL
>Mature_476_residues
MKLKINLNDMQYRYDVYQILNIYYNFYDITFVNEDYDMKIEITDEGMYIKKEDEKIEYEKDTNLAKKEWVKKFLFLYLKS
ITNKNLPWGTLVGIRPSKIALDLMNKGMGEKEIIDWFSKHRNTRADKTKLCIDIANMEKSIVNKDQNTISVYVGMPFCPT
RCLYCSFTSNPIGKCKNLVEPYLKALYYEMDMLSKYIQHRSLKIQCVYFGGGTPTSVNDAQFEKTLNKIYYNFVHNKEVE
EFTVECGRPDSITEEKLLSMKKYNVDRISINPQTMNNSTLKNIGRTHSVEDIERIYYLAKSIGFKNINMDLIVGLPGEGI
EEIKNTCRKIKKLNPDNITVHGMSIKRGSILHEKLVNKMEFNIPKQEELNKMYEETEALAKDLGIKPYYMYRQKNMLGNM
ENVGYSKENKIGIYNIQMIEERQTIIALGADAVSKIIFMDENRIERSPNVKDVIEYTKRVEEMVHRKKKILDTLYL

Specific function: Anaerobic transformation of coproporphyrinogen-III into protoporphyrinogen-IX [H]

COG id: COG0635

COG function: function code H; Coproporphyrinogen III oxidase and related Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anaerobic coproporphyrinogen-III oxidase family [H]

Homologues:

Organism=Homo sapiens, GI8922911, Length=243, Percent_Identity=26.3374485596708, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI1789325, Length=299, Percent_Identity=25.0836120401338, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI87082341, Length=202, Percent_Identity=27.2277227722772, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: =1.3.99.22 [H]

Molecular weight: Translated: 55874; Mature: 55874

Theoretical pI: Translated: 8.70; Mature: 8.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKINLNDMQYRYDVYQILNIYYNFYDITFVNEDYDMKIEITDEGMYIKKEDEKIEYEK
CEEEEECCCHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCC
DTNLAKKEWVKKFLFLYLKSITNKNLPWGTLVGIRPSKIALDLMNKGMGEKEIIDWFSKH
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
RNTRADKTKLCIDIANMEKSIVNKDQNTISVYVGMPFCPTRCLYCSFTSNPIGKCKNLVE
CCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHH
PYLKALYYEMDMLSKYIQHRSLKIQCVYFGGGTPTSVNDAQFEKTLNKIYYNFVHNKEVE
HHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
EFTVECGRPDSITEEKLLSMKKYNVDRISINPQTMNNSTLKNIGRTHSVEDIERIYYLAK
HHHHCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
SIGFKNINMDLIVGLPGEGIEEIKNTCRKIKKLNPDNITVHGMSIKRGSILHEKLVNKME
HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
FNIPKQEELNKMYEETEALAKDLGIKPYYMYRQKNMLGNMENVGYSKENKIGIYNIQMIE
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHCCCCCCCCEEEEEEEEEE
ERQTIIALGADAVSKIIFMDENRIERSPNVKDVIEYTKRVEEMVHRKKKILDTLYL
CCCEEEEECHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLKINLNDMQYRYDVYQILNIYYNFYDITFVNEDYDMKIEITDEGMYIKKEDEKIEYEK
CEEEEECCCHHHHHHHHHHHHHHHEEEEEEEECCCCEEEEEEECCCEEEEECCCCCCCCC
DTNLAKKEWVKKFLFLYLKSITNKNLPWGTLVGIRPSKIALDLMNKGMGEKEIIDWFSKH
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHH
RNTRADKTKLCIDIANMEKSIVNKDQNTISVYVGMPFCPTRCLYCSFTSNPIGKCKNLVE
CCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEECCCCHHHHHHHHH
PYLKALYYEMDMLSKYIQHRSLKIQCVYFGGGTPTSVNDAQFEKTLNKIYYNFVHNKEVE
HHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH
EFTVECGRPDSITEEKLLSMKKYNVDRISINPQTMNNSTLKNIGRTHSVEDIERIYYLAK
HHHHCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCHHHHHHHHHHHH
SIGFKNINMDLIVGLPGEGIEEIKNTCRKIKKLNPDNITVHGMSIKRGSILHEKLVNKME
HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
FNIPKQEELNKMYEETEALAKDLGIKPYYMYRQKNMLGNMENVGYSKENKIGIYNIQMIE
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCHHHCCCCCCCCEEEEEEEEEE
ERQTIIALGADAVSKIIFMDENRIERSPNVKDVIEYTKRVEEMVHRKKKILDTLYL
CCCEEEEECHHHHHHEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 10568751 [H]