| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is 170755401
Identifier: 170755401
GI number: 170755401
Start: 582185
End: 583078
Strand: Direct
Name: 170755401
Synonym: CLD_0278
Alternate gene names: NA
Gene position: 582185-583078 (Clockwise)
Preceding gene: 170756111
Following gene: 170755923
Centisome position: 14.71
GC content: 27.18
Gene sequence:
>894_bases ATGCTTAAAAGAGATACTAGAGTTCAAATTGTTATTGTGGAAAATGGGAAGTATATACTATTAAAACATTGGGTTAAATT AGAAAATAGATATTTTTGGGCTTTGCCTGGTGGAGGAAGAGAAAAGGGTGAAAGCTTAGAAGAAGCAGCTATAAGGGAAG CTAAAGAGGAAACGGGACTAGATATAGAGCTTTTTCCCTTGACATATGAATCTTTACCGCCAATAAAAAATTCTATGTAT AAAAACATGGTAACTTTTGTTGGATATCCAGTAAAGGGAGAAGCAAAGGTAGGGTATGATCCAGAAGAAGAGTTAAAAGA CTTTTATGGATTAGTAGATATAAAGTGGCAGAATTTACGAGATGAAGAAGGATTAACAGATGTAACTATAAGGGATGTAG GGGGAATATTAGATAGGCTTCAAGCAGAAAATATAGAAGAGGAAAAAATTTTTTTAATATATGGACAGAAAGATAATGTA AGAGAGTATTTAGTTTTAAATAATATTAATAATATAAGGGATCAGTGTAGTTCACCCTATATAAATAAAAATGTAAGTGA TAATGAAATAAAATTTTTATGTTTAAATAAAGACAATGAATATAGTTTCTGTGGAAATAATTGTAGTTTAAATTCAAAAT GCTGTAGCTGGGAAGTATATTTACAAGAAATGTTAGGGATAAAATTAAAAAATGTAACAGAGCAAAAAAAATTAGGCATA TTTTTGTATAAAAAAAATAATAATTTTTTCAAAAGAAATATTACCCTAATTCCGTTGAAAAAAGAAGAAAAAATTTATAA AAAGCACACCTTTATAAAAGAAGAAGATGTATTAAAAGAAAATATTTCAGAAGATTTAGTTAGAATATTTACATTTATCA AGGATAATATATAA
Upstream 100 bases:
>100_bases TTTTAGGATACCCTCTTTAATTTCATGATATTATTTTCTTTAGATAGAGTTTTATAATAAAAAATGACATTGATTTTTTA GGGAAATAGGAGATGACAAT
Downstream 100 bases:
>100_bases ATAAGTTTGTAAAACTAATATTAATGATGGTGAAAAACACATATTAAAGAGGCTATTCCATAAAAAGGAAAATGATTTTT TTTATAGAAGAATTTAAAGG
Product: NUDIX family hydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MLKRDTRVQIVIVENGKYILLKHWVKLENRYFWALPGGGREKGESLEEAAIREAKEETGLDIELFPLTYESLPPIKNSMY KNMVTFVGYPVKGEAKVGYDPEEELKDFYGLVDIKWQNLRDEEGLTDVTIRDVGGILDRLQAENIEEEKIFLIYGQKDNV REYLVLNNINNIRDQCSSPYINKNVSDNEIKFLCLNKDNEYSFCGNNCSLNSKCCSWEVYLQEMLGIKLKNVTEQKKLGI FLYKKNNNFFKRNITLIPLKKEEKIYKKHTFIKEEDVLKENISEDLVRIFTFIKDNI
Sequences:
>Translated_297_residues MLKRDTRVQIVIVENGKYILLKHWVKLENRYFWALPGGGREKGESLEEAAIREAKEETGLDIELFPLTYESLPPIKNSMY KNMVTFVGYPVKGEAKVGYDPEEELKDFYGLVDIKWQNLRDEEGLTDVTIRDVGGILDRLQAENIEEEKIFLIYGQKDNV REYLVLNNINNIRDQCSSPYINKNVSDNEIKFLCLNKDNEYSFCGNNCSLNSKCCSWEVYLQEMLGIKLKNVTEQKKLGI FLYKKNNNFFKRNITLIPLKKEEKIYKKHTFIKEEDVLKENISEDLVRIFTFIKDNI >Mature_297_residues MLKRDTRVQIVIVENGKYILLKHWVKLENRYFWALPGGGREKGESLEEAAIREAKEETGLDIELFPLTYESLPPIKNSMY KNMVTFVGYPVKGEAKVGYDPEEELKDFYGLVDIKWQNLRDEEGLTDVTIRDVGGILDRLQAENIEEEKIFLIYGQKDNV REYLVLNNINNIRDQCSSPYINKNVSDNEIKFLCLNKDNEYSFCGNNCSLNSKCCSWEVYLQEMLGIKLKNVTEQKKLGI FLYKKNNNFFKRNITLIPLKKEEKIYKKHTFIKEEDVLKENISEDLVRIFTFIKDNI
Specific function: Unknown
COG id: COG1051
COG function: function code F; ADP-ribose pyrophosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34825; Mature: 34825
Theoretical pI: Translated: 5.39; Mature: 5.39
Prosite motif: PS00893 NUDIX
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRDTRVQIVIVENGKYILLKHWVKLENRYFWALPGGGREKGESLEEAAIREAKEETGL CCCCCCEEEEEEEECCCEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC DIELFPLTYESLPPIKNSMYKNMVTFVGYPVKGEAKVGYDPEEELKDFYGLVDIKWQNLR EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCC DEEGLTDVTIRDVGGILDRLQAENIEEEKIFLIYGQKDNVREYLVLNNINNIRDQCSSPY CCCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHCCCC INKNVSDNEIKFLCLNKDNEYSFCGNNCSLNSKCCSWEVYLQEMLGIKLKNVTEQKKLGI CCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCEEE FLYKKNNNFFKRNITLIPLKKEEKIYKKHTFIKEEDVLKENISEDLVRIFTFIKDNI EEEECCCCEEEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLKRDTRVQIVIVENGKYILLKHWVKLENRYFWALPGGGREKGESLEEAAIREAKEETGL CCCCCCEEEEEEEECCCEEEEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCC DIELFPLTYESLPPIKNSMYKNMVTFVGYPVKGEAKVGYDPEEELKDFYGLVDIKWQNLR EEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCEEEEEECCCC DEEGLTDVTIRDVGGILDRLQAENIEEEKIFLIYGQKDNVREYLVLNNINNIRDQCSSPY CCCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECCCHHHHHHHCCCC INKNVSDNEIKFLCLNKDNEYSFCGNNCSLNSKCCSWEVYLQEMLGIKLKNVTEQKKLGI CCCCCCCCCEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHCCCHHCCCCCCCEEE FLYKKNNNFFKRNITLIPLKKEEKIYKKHTFIKEEDVLKENISEDLVRIFTFIKDNI EEEECCCCEEEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA