| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170755286
Identifier: 170755286
GI number: 170755286
Start: 2316579
End: 2319194
Strand: Reverse
Name: 170755286
Synonym: CLD_2460
Alternate gene names: NA
Gene position: 2319194-2316579 (Counterclockwise)
Preceding gene: 170754231
Following gene: 170756075
Centisome position: 58.59
GC content: 36.35
Gene sequence:
>2616_bases ATGGCAGATGGTAGCATTGTTATAGATACTAAAATTGATAGTAGTGGTGCTGAAAAAGGAATAGGAAAATTAAATAGTAT AGCTAAAGCTGGTGCGAAAGGTTTTGGCATTGCAGTAGCTGGAGTTGCTACTGCTGTAGGTGGGTTATCTATTGCAGCGA TTAAAGTTGGAATGGGTTTTGAAGAAGGTATGTCTAAAGTACAAGCTATTTCTGGTGCTACAGGAGAAGAAATAAAACTT CTTACAGATAAAGCAAAAGAAATGGGTGCTAAGACTAAATTTAGTGCTGGAGAAAGTGCACAGGCATTTCAATATATGGC TATGGCTGGATGGAAAACTGGCGATATGTTAAATGGTATTGATGGGATCATGAATCTAGCCGCAGCGTCCGGGGAAGATC TGGCACTAGTTTCTGATATTGTTACGGATGCACTTACTGCCTTTGGAATGTCTGCTAAAGATAGTGCTCAATTCGCAGAT TTATTAGCTAGTGCTGCAAGTAATTCAAATACCAACGTTTCAATGTTAGGTGAATCTTTTAAATATGTTGCTCCAGTTGC AGGTGCTTTAGGACATAGTGCTAAAGATACAGCCTTTGCTCTTGGTTTAATGGCTAACGCTGGAATAAAAGGTAGTCAAA GTGGTACTGCATTAAGAGCATCTTTAACTAATTTAGCACATCCTAGTAAGCAAATGGCTGAGGAAATGGATAGATTGGGA ATATCTCTAGTTGATTCTAATGGTAAGGTTAAAGAAGGTAAAGCTCTTTACGATGAGTTAAGGCAAAAATTTAGTGGACT TACAGATGCTCAAAAAACTCAATCAGCAGCAACTATTTTTGGTAAAGAAGCTATGAGTGGTATGTTATCTATCATTAATG CTTCAGAGGGAGATTACAATAACCTTTATAATAGTTTAACTAATTCTGCAGGTGCAGCTGAAAACATGGCTAAAACTATG CAGAATAATTTAGCTGGTTCAATTGAACAGTTAGGTGGAGGACTAGAGACATTAGGATTGACTGCTTATGATAAATTTAA GGAGCCTATGAAGGATGCTATTGATACAGCAACAGAAGCGGTAGACTCCTTAGTTGATAGCTTGAGTAATGGTCAGTTAG GTGAAAGTGTAGATAAAATAGCAGTGAGTTTTGGAAAATTAATAGAAAAGTTATCTGAAAGTGTTACAAATTGGTTACCT AAAATAATTGATGCTTTAGCGTGGATTATGGATAATGCTAGTTTTATAGCTTCAGGAATAGCAGGAATAGGAACAGCATT AATGGTCTTAAATGTTGCTAATATGATAATGGGCTTAGTTGAAGCTTTTAAAGCTTTTAAAGCAGCTAATGAAGGAGCAA CTGTAGCACAATGGTTGCTAAATGCTGCAATGGCAGCTAATCCTATAGGATTAGTAGTATCCATTATAGCTGGATTGATA GCTGGAATAATAGTTCTTTGGAACACGAACGAAGATTTTAGAAATGCTGTAATAGATGCATGGAACGCTATTTTAGGAGC AGCTCAAACAGTATGGGGCGGAATAGTTAATTTCTTTACTGTGGATATACCTGCCGCATGGCAATCACTATTAGATTTTT TTAATGGTGTACCTGGTTGGTTTGCTGATCTATGGACTACAATACAACAAGCTTTTGTAGATGGTTGGAATGCTATAGTA AATTTCTTTACACAGACTATTCCACAATGGATAGATAGTGTAGGAGAATGGTTTAATGAATTACCTCACCTAATTGGTTA TGCCTTAGGATATGCTTTAGGAACTATAGTTAAGTGGGGAGTAGATACATGGAATTATCTTGTTACCAATGTACCTATTT GGATAAATAATGTTGTTAACTTTTTTGCTACATTACCAGGTAGGATTTGGACTTGGCTAGTTAATACAATTAATAGAATA GTAAATTGGGGACAACAAACTTATACCAATATGGTTAATGCTGCTACAAGAGCTATAAATGCGACTATTCAATGGTTTGG TCAGTTACCAGGCAGAATATGGACTTGGTTAGTTAATACAATATCTAGGGTAGCAGAATTTGCAGTTAATCTAGCTTCAA GAGCACGGGAGGCTGGAGCTAATATGGTAACAAATCTAGTTGAAGCAGTTAGAAATTTACCTTCCAGATTTGCGGAGATA GGACGAAATATTGTTCAAGGTGTATGGAACGGTATTACTGGAATGGCCGGATGGATTAGGGATAGGGTAAATGGATTCTT TAGTGGAATTGTAGATGGTGCTAAAGACGCTTTAGGTATACATTCACCTTCCAGAGTTTTTAGGGATCAAGTAGGTAAAT ACATGGCCCAAGGTGTTGGAGTTGGATTTGAAAATGAAACTGAAAATATAAAAAGATCTATGAAGAAAAACTTATCAAGC CTTACTGCTAAAATGCAAGCGACAGTTGATTTAGAAACTTCTAAGACATCTAAAGCAATGACTTCTGGTAGCAGAACTAT AAATAATACTAAAGCTATAACTAATAATGATAATGGAGTAACTCAAATTAATAATTTTAATCAACCAGTTAAATCTCCAT CCGAAACCGCTAGAGCACTTAAAAGAGTTGGGAGGGATTTAGCCCTTGGATATTAA
Upstream 100 bases:
>100_bases TTAAATTAGAAATTGAGCAAAGAACAGAGCCAAACCACACCATAGAGTAGTGAGTGAGCCTGTCTTTTTTATTTTATTTA AAAAGGCAGGTGAAAATTAT
Downstream 100 bases:
>100_bases ATTAACACTTAAAAGTAATAATAAAATATTAGAAATAGCTAAAGATTATAAACTTTTCGATATAGAAGGTATAGAAACGG CAGAGTTTGAATTAAATATA
Product: phage protein
Products: NA
Alternate protein names: Phage Protein; Phage Tape Measure Protein; Phage-Related Tail Protein; Phage Related Protein; Phage Tail Tape Measure Protein Family Core Region; Tape Measure Protein; Phage Tail Tape Measure Protein Family; Phage Tail Protein; Minor Tail -Like; Tail Length Tape Measure Protein; Phage Tail Tape Measure Core Region; Phage Tail Length Tape-Measure Protein; Phage Tail Fiber Protein; Phage-Like Protein; Phage Minor Tail Protein; Tail Tape Measure Protein; Prophage Pi3 Protein; Truncated PhiSLT; Bacteriophage-Related Protein; Bacteriophage Tape Measure Protein; TMP Repeat Family; Tape Measure Protein Tmp; Prophage; Prophage Tail Length Determinator; Tail Fiber Protein T; TMP Repeat Protein; Phage Tail Like Protein; LigA Protein; Bacteriophage P2 Tail Protein GpT; Bacteriophage Tail Fiber Protein T; Minor Tail Protein Gp; Phage Tail; Phage Protein Tail Length Tape Measure Protein; Tail Protein; Phage-Related Minor Tail Protein; Mu-Like Phage Minor Tail Protein; Family Phage Tail Tape Measure Protein; Phage Tail Tape Measure Protein Core Region; Phage Tail Tape Measure Protein TMP
Number of amino acids: Translated: 871; Mature: 870
Protein sequence:
>871_residues MADGSIVIDTKIDSSGAEKGIGKLNSIAKAGAKGFGIAVAGVATAVGGLSIAAIKVGMGFEEGMSKVQAISGATGEEIKL LTDKAKEMGAKTKFSAGESAQAFQYMAMAGWKTGDMLNGIDGIMNLAAASGEDLALVSDIVTDALTAFGMSAKDSAQFAD LLASAASNSNTNVSMLGESFKYVAPVAGALGHSAKDTAFALGLMANAGIKGSQSGTALRASLTNLAHPSKQMAEEMDRLG ISLVDSNGKVKEGKALYDELRQKFSGLTDAQKTQSAATIFGKEAMSGMLSIINASEGDYNNLYNSLTNSAGAAENMAKTM QNNLAGSIEQLGGGLETLGLTAYDKFKEPMKDAIDTATEAVDSLVDSLSNGQLGESVDKIAVSFGKLIEKLSESVTNWLP KIIDALAWIMDNASFIASGIAGIGTALMVLNVANMIMGLVEAFKAFKAANEGATVAQWLLNAAMAANPIGLVVSIIAGLI AGIIVLWNTNEDFRNAVIDAWNAILGAAQTVWGGIVNFFTVDIPAAWQSLLDFFNGVPGWFADLWTTIQQAFVDGWNAIV NFFTQTIPQWIDSVGEWFNELPHLIGYALGYALGTIVKWGVDTWNYLVTNVPIWINNVVNFFATLPGRIWTWLVNTINRI VNWGQQTYTNMVNAATRAINATIQWFGQLPGRIWTWLVNTISRVAEFAVNLASRAREAGANMVTNLVEAVRNLPSRFAEI GRNIVQGVWNGITGMAGWIRDRVNGFFSGIVDGAKDALGIHSPSRVFRDQVGKYMAQGVGVGFENETENIKRSMKKNLSS LTAKMQATVDLETSKTSKAMTSGSRTINNTKAITNNDNGVTQINNFNQPVKSPSETARALKRVGRDLALGY
Sequences:
>Translated_871_residues MADGSIVIDTKIDSSGAEKGIGKLNSIAKAGAKGFGIAVAGVATAVGGLSIAAIKVGMGFEEGMSKVQAISGATGEEIKL LTDKAKEMGAKTKFSAGESAQAFQYMAMAGWKTGDMLNGIDGIMNLAAASGEDLALVSDIVTDALTAFGMSAKDSAQFAD LLASAASNSNTNVSMLGESFKYVAPVAGALGHSAKDTAFALGLMANAGIKGSQSGTALRASLTNLAHPSKQMAEEMDRLG ISLVDSNGKVKEGKALYDELRQKFSGLTDAQKTQSAATIFGKEAMSGMLSIINASEGDYNNLYNSLTNSAGAAENMAKTM QNNLAGSIEQLGGGLETLGLTAYDKFKEPMKDAIDTATEAVDSLVDSLSNGQLGESVDKIAVSFGKLIEKLSESVTNWLP KIIDALAWIMDNASFIASGIAGIGTALMVLNVANMIMGLVEAFKAFKAANEGATVAQWLLNAAMAANPIGLVVSIIAGLI AGIIVLWNTNEDFRNAVIDAWNAILGAAQTVWGGIVNFFTVDIPAAWQSLLDFFNGVPGWFADLWTTIQQAFVDGWNAIV NFFTQTIPQWIDSVGEWFNELPHLIGYALGYALGTIVKWGVDTWNYLVTNVPIWINNVVNFFATLPGRIWTWLVNTINRI VNWGQQTYTNMVNAATRAINATIQWFGQLPGRIWTWLVNTISRVAEFAVNLASRAREAGANMVTNLVEAVRNLPSRFAEI GRNIVQGVWNGITGMAGWIRDRVNGFFSGIVDGAKDALGIHSPSRVFRDQVGKYMAQGVGVGFENETENIKRSMKKNLSS LTAKMQATVDLETSKTSKAMTSGSRTINNTKAITNNDNGVTQINNFNQPVKSPSETARALKRVGRDLALGY >Mature_870_residues ADGSIVIDTKIDSSGAEKGIGKLNSIAKAGAKGFGIAVAGVATAVGGLSIAAIKVGMGFEEGMSKVQAISGATGEEIKLL TDKAKEMGAKTKFSAGESAQAFQYMAMAGWKTGDMLNGIDGIMNLAAASGEDLALVSDIVTDALTAFGMSAKDSAQFADL LASAASNSNTNVSMLGESFKYVAPVAGALGHSAKDTAFALGLMANAGIKGSQSGTALRASLTNLAHPSKQMAEEMDRLGI SLVDSNGKVKEGKALYDELRQKFSGLTDAQKTQSAATIFGKEAMSGMLSIINASEGDYNNLYNSLTNSAGAAENMAKTMQ NNLAGSIEQLGGGLETLGLTAYDKFKEPMKDAIDTATEAVDSLVDSLSNGQLGESVDKIAVSFGKLIEKLSESVTNWLPK IIDALAWIMDNASFIASGIAGIGTALMVLNVANMIMGLVEAFKAFKAANEGATVAQWLLNAAMAANPIGLVVSIIAGLIA GIIVLWNTNEDFRNAVIDAWNAILGAAQTVWGGIVNFFTVDIPAAWQSLLDFFNGVPGWFADLWTTIQQAFVDGWNAIVN FFTQTIPQWIDSVGEWFNELPHLIGYALGYALGTIVKWGVDTWNYLVTNVPIWINNVVNFFATLPGRIWTWLVNTINRIV NWGQQTYTNMVNAATRAINATIQWFGQLPGRIWTWLVNTISRVAEFAVNLASRAREAGANMVTNLVEAVRNLPSRFAEIG RNIVQGVWNGITGMAGWIRDRVNGFFSGIVDGAKDALGIHSPSRVFRDQVGKYMAQGVGVGFENETENIKRSMKKNLSSL TAKMQATVDLETSKTSKAMTSGSRTINNTKAITNNDNGVTQINNFNQPVKSPSETARALKRVGRDLALGY
Specific function: Unknown
COG id: COG5283
COG function: function code S; Phage-related tail protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92545; Mature: 92414
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00359 RIBOSOMAL_L11 ; PS00445 FGGY_KINASES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADGSIVIDTKIDSSGAEKGIGKLNSIAKAGAKGFGIAVAGVATAVGGLSIAAIKVGMGF CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCH EEGMSKVQAISGATGEEIKLLTDKAKEMGAKTKFSAGESAQAFQYMAMAGWKTGDMLNGI HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH DGIMNLAAASGEDLALVSDIVTDALTAFGMSAKDSAQFADLLASAASNSNTNVSMLGESF HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH KYVAPVAGALGHSAKDTAFALGLMANAGIKGSQSGTALRASLTNLAHPSKQMAEEMDRLG HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC ISLVDSNGKVKEGKALYDELRQKFSGLTDAQKTQSAATIFGKEAMSGMLSIINASEGDYN CEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH NLYNSLTNSAGAAENMAKTMQNNLAGSIEQLGGGLETLGLTAYDKFKEPMKDAIDTATEA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDSLVDSLSNGQLGESVDKIAVSFGKLIEKLSESVTNWLPKIIDALAWIMDNASFIASGI HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH AGIGTALMVLNVANMIMGLVEAFKAFKAANEGATVAQWLLNAAMAANPIGLVVSIIAGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH AGIIVLWNTNEDFRNAVIDAWNAILGAAQTVWGGIVNFFTVDIPAAWQSLLDFFNGVPGW HHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH FADLWTTIQQAFVDGWNAIVNFFTQTIPQWIDSVGEWFNELPHLIGYALGYALGTIVKWG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VDTWNYLVTNVPIWINNVVNFFATLPGRIWTWLVNTINRIVNWGQQTYTNMVNAATRAIN CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATIQWFGQLPGRIWTWLVNTISRVAEFAVNLASRAREAGANMVTNLVEAVRNLPSRFAEI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRNIVQGVWNGITGMAGWIRDRVNGFFSGIVDGAKDALGIHSPSRVFRDQVGKYMAQGVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC VGFENETENIKRSMKKNLSSLTAKMQATVDLETSKTSKAMTSGSRTINNTKAITNNDNGV CCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHCCCCCCCCCCCEECCCCCC TQINNFNQPVKSPSETARALKRVGRDLALGY EEECCCCCCCCCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure ADGSIVIDTKIDSSGAEKGIGKLNSIAKAGAKGFGIAVAGVATAVGGLSIAAIKVGMGF CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHCCCH EEGMSKVQAISGATGEEIKLLTDKAKEMGAKTKFSAGESAQAFQYMAMAGWKTGDMLNGI HHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH DGIMNLAAASGEDLALVSDIVTDALTAFGMSAKDSAQFADLLASAASNSNTNVSMLGESF HHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHH KYVAPVAGALGHSAKDTAFALGLMANAGIKGSQSGTALRASLTNLAHPSKQMAEEMDRLG HHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCC ISLVDSNGKVKEGKALYDELRQKFSGLTDAQKTQSAATIFGKEAMSGMLSIINASEGDYN CEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH NLYNSLTNSAGAAENMAKTMQNNLAGSIEQLGGGLETLGLTAYDKFKEPMKDAIDTATEA HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH VDSLVDSLSNGQLGESVDKIAVSFGKLIEKLSESVTNWLPKIIDALAWIMDNASFIASGI HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH AGIGTALMVLNVANMIMGLVEAFKAFKAANEGATVAQWLLNAAMAANPIGLVVSIIAGLI HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH AGIIVLWNTNEDFRNAVIDAWNAILGAAQTVWGGIVNFFTVDIPAAWQSLLDFFNGVPGW HHHEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHH FADLWTTIQQAFVDGWNAIVNFFTQTIPQWIDSVGEWFNELPHLIGYALGYALGTIVKWG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VDTWNYLVTNVPIWINNVVNFFATLPGRIWTWLVNTINRIVNWGQQTYTNMVNAATRAIN CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATIQWFGQLPGRIWTWLVNTISRVAEFAVNLASRAREAGANMVTNLVEAVRNLPSRFAEI HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GRNIVQGVWNGITGMAGWIRDRVNGFFSGIVDGAKDALGIHSPSRVFRDQVGKYMAQGVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC VGFENETENIKRSMKKNLSSLTAKMQATVDLETSKTSKAMTSGSRTINNTKAITNNDNGV CCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHCCCCCCCCCCCEECCCCCC TQINNFNQPVKSPSETARALKRVGRDLALGY EEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA