| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is 170755269
Identifier: 170755269
GI number: 170755269
Start: 1535601
End: 1536074
Strand: Direct
Name: 170755269
Synonym: CLD_3165
Alternate gene names: NA
Gene position: 1535601-1536074 (Clockwise)
Preceding gene: 170756296
Following gene: 170754496
Centisome position: 38.8
GC content: 30.8
Gene sequence:
>474_bases ATGCCAAGACCAACAAAGTTTAGAAGAGTAGAATTTTTCCCAGAGAATAATTATTTTGTGCCCTGGGGGAAACCTAAATG TGAAATACATGAGGTAGTATTAAAAGTTGAAGAATTAGAGGCTATGAGACTTAAGGATATAGAAGAATTAAATCAAGAAC AATGTGCGGAAAAAATGGAAATATCTCGCCAAACCTTTCAAAATATAATAGATAGTGCTAGAAAAAAGGTAGCTATAGCT TTAACAGAGGGAAATGCTATAAAAATAAGCGGAGGACATTATACTACGAAGCTTTGTAAACTAAAATGTATAGATTGTGA AGAAATTTATGAAATAAATTATGAACAGGATAGACATCTATGTCCTAATTGTGGATCAGAGAAAGTAATATGTAACAAGA AAGCTGATTTTTGTAGAAGATGGTGTAAAGGACAAAATAGGAAAGAACAATATGAGGAAAGTAAAAATAAATAA
Upstream 100 bases:
>100_bases TAAAATTAAATAGATCTATAGAACATAGTAAAGACTTAGAAATTCGTGATGCTAATATATTATTTTTAGGGTTATGTAGT AGATGCAAGGAGGAAGAAAA
Downstream 100 bases:
>100_bases ATTATTAAATTAAGCACCATTTATAAATGGTGCTTAATTATGATGGCTGTTTTAGATTGTATAGTAATAAAATTTAGGTA CTCACTTGTGAGATCATAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 157; Mature: 156
Protein sequence:
>157_residues MPRPTKFRRVEFFPENNYFVPWGKPKCEIHEVVLKVEELEAMRLKDIEELNQEQCAEKMEISRQTFQNIIDSARKKVAIA LTEGNAIKISGGHYTTKLCKLKCIDCEEIYEINYEQDRHLCPNCGSEKVICNKKADFCRRWCKGQNRKEQYEESKNK
Sequences:
>Translated_157_residues MPRPTKFRRVEFFPENNYFVPWGKPKCEIHEVVLKVEELEAMRLKDIEELNQEQCAEKMEISRQTFQNIIDSARKKVAIA LTEGNAIKISGGHYTTKLCKLKCIDCEEIYEINYEQDRHLCPNCGSEKVICNKKADFCRRWCKGQNRKEQYEESKNK >Mature_156_residues PRPTKFRRVEFFPENNYFVPWGKPKCEIHEVVLKVEELEAMRLKDIEELNQEQCAEKMEISRQTFQNIIDSARKKVAIAL TEGNAIKISGGHYTTKLCKLKCIDCEEIYEINYEQDRHLCPNCGSEKVICNKKADFCRRWCKGQNRKEQYEESKNK
Specific function: Unknown
COG id: COG1342
COG function: function code R; Predicted DNA-binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0251 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002852 [H]
Pfam domain/function: PF02001 DUF134 [H]
EC number: NA
Molecular weight: Translated: 18569; Mature: 18437
Theoretical pI: Translated: 8.08; Mature: 8.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
6.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 8.3 %Cys+Met (Translated Protein) 6.4 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 7.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRPTKFRRVEFFPENNYFVPWGKPKCEIHEVVLKVEELEAMRLKDIEELNQEQCAEKME CCCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISRQTFQNIIDSARKKVAIALTEGNAIKISGGHYTTKLCKLKCIDCEEIYEINYEQDRHL HHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCEEEHEEEEEECCHHHHHHCCCCCCCCC CPNCGSEKVICNKKADFCRRWCKGQNRKEQYEESKNK CCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHCCC >Mature Secondary Structure PRPTKFRRVEFFPENNYFVPWGKPKCEIHEVVLKVEELEAMRLKDIEELNQEQCAEKME CCCCCCEEEEEECCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ISRQTFQNIIDSARKKVAIALTEGNAIKISGGHYTTKLCKLKCIDCEEIYEINYEQDRHL HHHHHHHHHHHHHHHEEEEEEECCCEEEEECCCEEEHEEEEEECCHHHHHHCCCCCCCCC CPNCGSEKVICNKKADFCRRWCKGQNRKEQYEESKNK CCCCCCCCEEECCCHHHHHHHHCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA