Click here to switch to the map view.

The map label for this gene is yhaM [H]

Identifier: 170755221

GI number: 170755221

Start: 3483819

End: 3484715

Strand: Reverse

Name: yhaM [H]

Synonym: CLD_1325

Alternate gene names: 170755221

Gene position: 3484715-3483819 (Counterclockwise)

Preceding gene: 170756260

Following gene: 170754613

Centisome position: 88.04

GC content: 28.32

Gene sequence:

>897_bases
ATGAAAAGAATATACATAAAAGAGGCGAAGCACGGTGAAAAAATAGATTCTCAATTTATGATACTAAAGAAAATATATAA
AGATGGAGATAGCATTATAGCTTATATGGGAGATAAAACTGGAGACATCAAAGTTAAAATTTTAGATAAAAAAGGCGTTT
TAGATGCAGGGGATGTTATAGAATGTAGTTTTATATTTTCTAATAACAGCGAAATATTAAATTTTAAAAAAATAGATGAA
TTTTTATTGGAAGATTTTTTACCTACTGTAGATAGACCTATAGAAGAAATAATGAATGAAATAGAACAAATATCAAAAGA
TGAATTCAAGAGCAAAGAGTGTATAGAACTAAATAATTATTTTTTTAAAGACCAAAAATTTTTAGATAAATTTAAAAAAG
GAATAGGCGGGGTAAGTCAGCATCATAATTATATAGGCGGATTAGCAGAACATACATTGAATGTAATGTATTTAGCTAAA
ATGTTATGTTATAGATATCATGTTAAAAATAAGGAATTAACTATATTATCAGCCAAACTTCATGATATAGGGAAAACAGA
GGAACTAAGTACTAATGGTCCCTTTACTTACACACTGAAAGGAGAGATGGAAGGACATATAGTTATAGGTGCAGAAATGC
TTCAGAGAGCATTCAATGATAATATAGAAGCATATAGTGAAGATTTCAAACAAAGAGTAAAAGCCTGCATAATTCAGCAT
CATGGAAAAGTAGAATATGGTTCTCCAAGATCTCCAAAGTTAGAAGAAAGTTATGTGGTTCATTATGCGGATTATATAGA
TGCTAATATGAATAAAATAGCTATAGTAAAAAAGAATGTAGAGGAAAATACTTGGAGTCAATATGACAGAAGAATTGAAG
GAAAGATTTATGTATAG

Upstream 100 bases:

>100_bases
AAAAATTAGGGAAGAATAAAAAAAGTAAATAAGATAAAGAATAAAGGTGATTTTATATTACCTTTATTTTTTTACAAAAT
ATAAAAGGAGAGCTGATACA

Downstream 100 bases:

>100_bases
CATATTAAAAAATATAGTAATATTGAATATAGAAAAATATTAAATACTTTATACTTTTTACTGTTGGTAGGTTCGTTTTA
TCAACAGCTTTTGTTTTTAT

Product: HDIG domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 298

Protein sequence:

>298_residues
MKRIYIKEAKHGEKIDSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVIECSFIFSNNSEILNFKKIDE
FLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNYFFKDQKFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAK
MLCYRYHVKNKELTILSAKLHDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKNVEENTWSQYDRRIEGKIYV

Sequences:

>Translated_298_residues
MKRIYIKEAKHGEKIDSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVIECSFIFSNNSEILNFKKIDE
FLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNYFFKDQKFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAK
MLCYRYHVKNKELTILSAKLHDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKNVEENTWSQYDRRIEGKIYV
>Mature_298_residues
MKRIYIKEAKHGEKIDSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVIECSFIFSNNSEILNFKKIDE
FLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNYFFKDQKFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAK
MLCYRYHVKNKELTILSAKLHDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKNVEENTWSQYDRRIEGKIYV

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 34553; Mature: 34553

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRIYIKEAKHGEKIDSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVI
CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEE
ECSFIFSNNSEILNFKKIDEFLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNY
EEEEEEECCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCCH
FFKDQKFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAKMLCYRYHVKNKELTILSAKL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEH
HDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HCCCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKNVEENTWSQYDRRIEGKIYV
CCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEC
>Mature Secondary Structure
MKRIYIKEAKHGEKIDSQFMILKKIYKDGDSIIAYMGDKTGDIKVKILDKKGVLDAGDVI
CCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCEE
ECSFIFSNNSEILNFKKIDEFLLEDFLPTVDRPIEEIMNEIEQISKDEFKSKECIELNNY
EEEEEEECCCCEEHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCEECCCH
FFKDQKFLDKFKKGIGGVSQHHNYIGGLAEHTLNVMYLAKMLCYRYHVKNKELTILSAKL
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEH
HDIGKTEELSTNGPFTYTLKGEMEGHIVIGAEMLQRAFNDNIEAYSEDFKQRVKACIIQH
HCCCCCCCCCCCCCEEEEEECCCCCEEEECHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
HGKVEYGSPRSPKLEESYVVHYADYIDANMNKIAIVKKNVEENTWSQYDRRIEGKIYV
CCCCCCCCCCCCCCCHHHEEEEHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA