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The map label for this gene is ydcP [H]

Identifier: 170754840

GI number: 170754840

Start: 3382064

End: 3384430

Strand: Reverse

Name: ydcP [H]

Synonym: CLD_1417

Alternate gene names: 170754840

Gene position: 3384430-3382064 (Counterclockwise)

Preceding gene: 170756811

Following gene: 170755146

Centisome position: 85.5

GC content: 27.04

Gene sequence:

>2367_bases
ATGAGAAAAATAGAATTACTAGCTCCAGCTGGAAGCGTGGAAAGTTTGTATGCTGCAGTACAGGCAGGAGCAGATGCGGT
ATACATGGGCGGAAGCAAATTTTCTGCTAGAGCTTATGCTAATAATTTTGATGATGAGCAATTAAAAGAGGCTATAAACT
ATTGTCATTTATATGGTGTTAAAGTATATATTACAGTTAATACATTAATAAAAGAAGAGGAAATAAAAGAAGCAATAAAG
TATATAGGATTTTTATATTCTATAGGGGTAGATGCTTTAATAATACAGGATACTGGAATAGCAAAATTAATAAAAGAGAA
CTTACCAAATTTTGAAATCCATGCATCTACCCAAATGACTATACATAATGGAGAAGGTGCTATATTTTTAAAAGAATTAG
GTTTTAAAAGAATAGTTTTATCACGAGAACTTTCATTAAAAGAAATAGAATATATTTCAAAGGACTTAGATATAGAAACG
GAAATATTTGTACATGGAGCTCTTTGTATTTGTTATTCAGGGCAATGTTTAATGAGTAGTATATTAGGTGGAAGAAGTGG
AAATAGAGGAAGATGTGCTCAACCTTGTAGGCTTCCCTATACATTGATAAATGAAAAGGATGATAAGGAAACAAAGGGGT
ATATATTAAGTCCTAAGGATATATGTAATATAGAAAACATGGGAGATTTAATAAAGGCTGGTGCTACATCTTTTAAGATA
GAAGGAAGAATGAAAAGACCAGAATATGTAGCAGGAGTAATTAGAAGTTATAGAAAAGCTATAGATGCAGCTATAAATAA
AGAAAATTTTGAAGAAGAACAAAATAAAAAAGAGTTAATGCAATTATTTAATAGAGAAGGTTTTTCAAAGGCATACCTTT
ATGGAAATAAGGGCAAAGATATGATGGCATATTCTTTTCCTAAAAATACAGGATTACTTTTAGGCAATGTAAATAAGGAT
AAAAGTATAAGATTAGAAGAGAACTTAAAAATAAAAGATGGTATAAGAAACGCTGATAAAGGTTTTATAGTGTCTAGTAT
AATTAAAGATAATAAAGAAGTAGAAGAAGCTTACAAAGGAGATTTAGTAAAAATAAAACCTTCAAATTATAAATTTAAGG
ATGAATTATATAAAACCTCAGATACGGAACTTTTACAGTCATTAGGTAAAATATATGAGGATAAATTTAATAAGAAAATT
TATTTAGAAGCTAATGTAGAGTTTAAAGTAGGCGAAAAAATAAAATTAAGCTGTAGATACAATGGAGAAGATTATTTTGC
AGAAGGGAAAAGAATAGAAAAGGCACTAAAAAAACCTTTATCCATGGAAAAAATAGAAGAAAATTTAATGAAAAGTGGGG
AAACTCCTTTCAAGATAAATAAAATTAAATTTAACTCTTATGAAGAAGGATTTTTACCAGTTTCAGAGATAAATAATTGC
CGTAGAATACTTATAAATTCCATAGAAGAAAAAATAATACAAAACAATCCACATTGTGGAAAAGTAAAAGAGCTTAATGT
GGATAATATATACAGTAACATAAATGGAATAAAAGAAAATGGTTTACCAAAGTATATATTTTCAATATATACCTATCAAC
AGTTAAGAGCTGTAGTGGACAATGGCTTTAAAAATATAATAGTAGATTTATTTACAAGGAATCCATTAAACTTACATAAA
ATAAAAGGATTATATCAGGATTTAAATATATATTTAAAAGCTCCTAATATTATAAAAAGCGAATTTGATTATGTAGAAAA
GATAATAGAAGATAATCTACATAACATAAAAGGTATAGTAACAGCTAACCTAGGTATAGTAAATAAATTTAATAATAGAA
CAGAAATAATAGGAGACTATAAATTAAATATATTTAATAGTTTTGCAGGGGATTTTTATAAAGACTTTATTAAAGGAAGT
TGTTTAAGTATAGAGCTTAATAAAAAAGAAGTAAAATCTATAGCTAAACATATGAATTTAGACCGTCAAATGCTTATATA
TGGTAAAATAGAAAATATGGTCAGTGAATACTGTCCTATAGGCAGTACATTTGGATGTAAAAATAGTTATTCTACTTGTA
ATAAAGCTTGTGAAAAAGGAATTTATACACTAAAGGATAGGATGAGTGTTAAATTCCCAGTTAAAACAGATATATTCTGT
AGAAGTCATATATACAATAATTCAGAGATTAATTTAATAGGAAACATAGAGGAACTAAGGACATTTGGAATTAATAGTTT
TAGATTAGATTTTCTAGAGGAGAATTATGAAGAAATTGAATATATATTAAAATCTCTTAAAGAAGAAAAATGGAAGGGAG
ATTTTAAGAATTATACAAGAGGTCATTATAAAAGAGGGGTAGAATAA

Upstream 100 bases:

>100_bases
TTTACTTTAGTGAACACAGATAAATAATAATGAATACAACATTTCAAATATGTTTAATCTATTGTATAATAAACTTTAGA
ATATTTTAGGAGAGATGAAC

Downstream 100 bases:

>100_bases
CTTAATAGAATATTTATACAATAAATCAGATATGGGTATATAGAAGTTATAATTAAGCTGAGAATAGATACGATTAAAAA
ATAATAGAAAAAGTAACAGA

Product: U32 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 788; Mature: 788

Protein sequence:

>788_residues
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEEEIKEAIK
YIGFLYSIGVDALIIQDTGIAKLIKENLPNFEIHASTQMTIHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYILSPKDICNIENMGDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGNVNKD
KSIRLEENLKIKDGIRNADKGFIVSSIIKDNKEVEEAYKGDLVKIKPSNYKFKDELYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEDYFAEGKRIEKALKKPLSMEKIEENLMKSGETPFKINKIKFNSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKVKELNVDNIYSNINGIKENGLPKYIFSIYTYQQLRAVVDNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSEFDYVEKIIEDNLHNIKGIVTANLGIVNKFNNRTEIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSIAKHMNLDRQMLIYGKIENMVSEYCPIGSTFGCKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
RSHIYNNSEINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEEKWKGDFKNYTRGHYKRGVE

Sequences:

>Translated_788_residues
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEEEIKEAIK
YIGFLYSIGVDALIIQDTGIAKLIKENLPNFEIHASTQMTIHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYILSPKDICNIENMGDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGNVNKD
KSIRLEENLKIKDGIRNADKGFIVSSIIKDNKEVEEAYKGDLVKIKPSNYKFKDELYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEDYFAEGKRIEKALKKPLSMEKIEENLMKSGETPFKINKIKFNSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKVKELNVDNIYSNINGIKENGLPKYIFSIYTYQQLRAVVDNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSEFDYVEKIIEDNLHNIKGIVTANLGIVNKFNNRTEIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSIAKHMNLDRQMLIYGKIENMVSEYCPIGSTFGCKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
RSHIYNNSEINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEEKWKGDFKNYTRGHYKRGVE
>Mature_788_residues
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGVKVYITVNTLIKEEEIKEAIK
YIGFLYSIGVDALIIQDTGIAKLIKENLPNFEIHASTQMTIHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIET
EIFVHGALCICYSGQCLMSSILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYILSPKDICNIENMGDLIKAGATSFKI
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKDMMAYSFPKNTGLLLGNVNKD
KSIRLEENLKIKDGIRNADKGFIVSSIIKDNKEVEEAYKGDLVKIKPSNYKFKDELYKTSDTELLQSLGKIYEDKFNKKI
YLEANVEFKVGEKIKLSCRYNGEDYFAEGKRIEKALKKPLSMEKIEENLMKSGETPFKINKIKFNSYEEGFLPVSEINNC
RRILINSIEEKIIQNNPHCGKVKELNVDNIYSNINGIKENGLPKYIFSIYTYQQLRAVVDNGFKNIIVDLFTRNPLNLHK
IKGLYQDLNIYLKAPNIIKSEFDYVEKIIEDNLHNIKGIVTANLGIVNKFNNRTEIIGDYKLNIFNSFAGDFYKDFIKGS
CLSIELNKKEVKSIAKHMNLDRQMLIYGKIENMVSEYCPIGSTFGCKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
RSHIYNNSEINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEEKWKGDFKNYTRGHYKRGVE

Specific function: Unknown

COG id: COG0826

COG function: function code O; Collagenase and related proteases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase U32 family [H]

Homologues:

Organism=Escherichia coli, GI87081910, Length=515, Percent_Identity=34.9514563106796, Blast_Score=251, Evalue=2e-67,
Organism=Escherichia coli, GI1788397, Length=354, Percent_Identity=33.3333333333333, Blast_Score=174, Evalue=3e-44,
Organism=Escherichia coli, GI1789548, Length=312, Percent_Identity=30.4487179487179, Blast_Score=147, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020988
- InterPro:   IPR001539 [H]

Pfam domain/function: PF12392 DUF3656; PF01136 Peptidase_U32 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 90264; Mature: 90264

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: PS01276 PEPTIDASE_U32

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGV
CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCHHHHHHHHHHHEEEEE
KVYITVNTLIKEEEIKEAIKYIGFLYSIGVDALIIQDTGIAKLIKENLPNFEIHASTQMT
EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEECEEEE
IHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIETEIFVHGALCICYSGQCLMSS
EECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHH
ILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYILSPKDICNIENMGDLIKAGATSFKI
HHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCHHHCCCHHHHHHHHCCCCEEEE
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
MMAYSFPKNTGLLLGNVNKDKSIRLEENLKIKDGIRNADKGFIVSSIIKDNKEVEEAYKG
CEEEECCCCCCEEEECCCCCCCEEECCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHHHCC
DLVKIKPSNYKFKDELYKTSDTELLQSLGKIYEDKFNKKIYLEANVEFKVGEKIKLSCRY
CEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEEEE
NGEDYFAEGKRIEKALKKPLSMEKIEENLMKSGETPFKINKIKFNSYEEGFLPVSEINNC
CCCHHHHCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHH
RRILINSIEEKIIQNNPHCGKVKELNVDNIYSNINGIKENGLPKYIFSIYTYQQLRAVVD
HHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
NGFKNIIVDLFTRNPLNLHKIKGLYQDLNIYLKAPNIIKSEFDYVEKIIEDNLHNIKGIV
CCHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCHHHCCEEE
TANLGIVNKFNNRTEIIGDYKLNIFNSFAGDFYKDFIKGSCLSIELNKKEVKSIAKHMNL
EECCEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
DRQMLIYGKIENMVSEYCPIGSTFGCKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
CCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEHHCCEEECCCCCCCEE
RSHIYNNSEINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEEKWKGDFKNYTR
HHHCCCCCCEEEEECHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHH
GHYKRGVE
HHHHCCCC
>Mature Secondary Structure
MRKIELLAPAGSVESLYAAVQAGADAVYMGGSKFSARAYANNFDDEQLKEAINYCHLYGV
CCEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHCCCCCHHHHHHHHHHHEEEEE
KVYITVNTLIKEEEIKEAIKYIGFLYSIGVDALIIQDTGIAKLIKENLPNFEIHASTQMT
EEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCEEEEECEEEE
IHNGEGAIFLKELGFKRIVLSRELSLKEIEYISKDLDIETEIFVHGALCICYSGQCLMSS
EECCCCEEEEECCCCHHHHHHHCCCHHHHHHHHHCCCCCEEEEEEEEEEEEECCHHHHHH
ILGGRSGNRGRCAQPCRLPYTLINEKDDKETKGYILSPKDICNIENMGDLIKAGATSFKI
HHCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCEEECCHHHCCCHHHHHHHHCCCCEEEE
EGRMKRPEYVAGVIRSYRKAIDAAINKENFEEEQNKKELMQLFNREGFSKAYLYGNKGKD
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCC
MMAYSFPKNTGLLLGNVNKDKSIRLEENLKIKDGIRNADKGFIVSSIIKDNKEVEEAYKG
CEEEECCCCCCEEEECCCCCCCEEECCCCCHHCCCCCCCCCHHHHHHHHCCHHHHHHHCC
DLVKIKPSNYKFKDELYKTSDTELLQSLGKIYEDKFNKKIYLEANVEFKVGEKIKLSCRY
CEEEECCCCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEEEECCEEEECCEEEEEEEE
NGEDYFAEGKRIEKALKKPLSMEKIEENLMKSGETPFKINKIKFNSYEEGFLPVSEINNC
CCCHHHHCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCHHHHHHH
RRILINSIEEKIIQNNPHCGKVKELNVDNIYSNINGIKENGLPKYIFSIYTYQQLRAVVD
HHHHHHHHHHHHHCCCCCCCCEEECCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
NGFKNIIVDLFTRNPLNLHKIKGLYQDLNIYLKAPNIIKSEFDYVEKIIEDNLHNIKGIV
CCHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCHHHCCEEE
TANLGIVNKFNNRTEIIGDYKLNIFNSFAGDFYKDFIKGSCLSIELNKKEVKSIAKHMNL
EECCEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHHHCCC
DRQMLIYGKIENMVSEYCPIGSTFGCKNSYSTCNKACEKGIYTLKDRMSVKFPVKTDIFC
CCEEEEEHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCEEHHCCEEECCCCCCCEE
RSHIYNNSEINLIGNIEELRTFGINSFRLDFLEENYEEIEYILKSLKEEKWKGDFKNYTR
HHHCCCCCCEEEEECHHHHHHHCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHH
GHYKRGVE
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]