| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754691
Identifier: 170754691
GI number: 170754691
Start: 642976
End: 643815
Strand: Direct
Name: 170754691
Synonym: CLD_0227
Alternate gene names: NA
Gene position: 642976-643815 (Clockwise)
Preceding gene: 170756852
Following gene: 170756358
Centisome position: 16.24
GC content: 25.48
Gene sequence:
>840_bases ATGAGTATTAAGATAACTACTCTGATAGAAGATTCTAAAAATGAAGAAAGTGAATTGATAGAAGAGCATGGGCTTTCTAT GTTCATAAATACTCCTAGGTGTAATATAATATTTGATACTGGTGCTTCGGGAAACTTTATAAAAAATGCTGATAAACTAA ATATTGATTTACATGAAACTAATTATATGATACTAAGCCATGCTCATTATGATCATTGTGGAGGAGTAAGAAGTTTTATA GAAAATATAAAATGTTATCCAGAATTATATGTAAGTAAAAATTTTTTTGGAAATAGCAATAAATTTAAAATAGGGAAAGA TAGAGAAAATAAATATTTAGGTATAGATTTTGATGAGAAGTATTTAATAGATAATGGTATACCCATAAATTATGTGGAGG AAGATATTTTAGAAATAGAACCTAATATATTTATAGTTACAAATTTTAAAGAGGATAATAGTTTTGAAGAGTTTACATCT AATATGGTAATAAAAAAGGGAGAGGGGTATATATTAGATAAGTTTAAAGAAGAAGTAGCATTAGCTATAGACACCTACAA AGGGTTAGTAGTTTTAGTTGGGTGTAGTCATGTGGGAATTGCTAATATATTAAATAATATAAGTAAAAGATTAAATAAAA GAATATATGCTGTATTAGGCGGAACTCACTTGATTAAATGTGATGAAAATAGAATAAATAAAACCATAGAAGCTTTTAAT AAATTAGATATTAATATTATAGGTGTTTCCCATTGTACAGGAGAATTTGCCACAATGAAATTAAAAGAATTAAAAGACAG GTTTTTCTTAAATAATACAGGGAATATATTAGAAATATAA
Upstream 100 bases:
>100_bases AAAGAAAATATAAATATATTTAAAAAATATAAATTTGTGGTAAAATTATAATATGTTTGTAATTAATTGACAATTATGGC CTATTAGGGAGGAAAGGGAT
Downstream 100 bases:
>100_bases AGCTATAGGAATAGATATTAAGCTTTTAATTTATCTATTCCTATAGCTTATTTTTATACCTTTAAATTTAAAGTACAAAA GTATATTTAAATAATTATTA
Product: metallo-beta-lactamase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSIKITTLIEDSKNEESELIEEHGLSMFINTPRCNIIFDTGASGNFIKNADKLNIDLHETNYMILSHAHYDHCGGVRSFI ENIKCYPELYVSKNFFGNSNKFKIGKDRENKYLGIDFDEKYLIDNGIPINYVEEDILEIEPNIFIVTNFKEDNSFEEFTS NMVIKKGEGYILDKFKEEVALAIDTYKGLVVLVGCSHVGIANILNNISKRLNKRIYAVLGGTHLIKCDENRINKTIEAFN KLDINIIGVSHCTGEFATMKLKELKDRFFLNNTGNILEI
Sequences:
>Translated_279_residues MSIKITTLIEDSKNEESELIEEHGLSMFINTPRCNIIFDTGASGNFIKNADKLNIDLHETNYMILSHAHYDHCGGVRSFI ENIKCYPELYVSKNFFGNSNKFKIGKDRENKYLGIDFDEKYLIDNGIPINYVEEDILEIEPNIFIVTNFKEDNSFEEFTS NMVIKKGEGYILDKFKEEVALAIDTYKGLVVLVGCSHVGIANILNNISKRLNKRIYAVLGGTHLIKCDENRINKTIEAFN KLDINIIGVSHCTGEFATMKLKELKDRFFLNNTGNILEI >Mature_278_residues SIKITTLIEDSKNEESELIEEHGLSMFINTPRCNIIFDTGASGNFIKNADKLNIDLHETNYMILSHAHYDHCGGVRSFIE NIKCYPELYVSKNFFGNSNKFKIGKDRENKYLGIDFDEKYLIDNGIPINYVEEDILEIEPNIFIVTNFKEDNSFEEFTSN MVIKKGEGYILDKFKEEVALAIDTYKGLVVLVGCSHVGIANILNNISKRLNKRIYAVLGGTHLIKCDENRINKTIEAFNK LDINIIGVSHCTGEFATMKLKELKDRFFLNNTGNILEI
Specific function: Catalyzes the condensation of 6-hydroxymethyl-7,8- dihydropterin pyrophosphate (DHPP) with 4-(beta-D-ribofuranosyl)- aminobenzene-5'-phosphate (beta-RFA-P) to form 7,8-dihydropterin- 6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate, a precursor
COG id: COG1237
COG function: function code R; Metal-dependent hydrolases of the beta-lactamase superfamily II
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 [H]
Pfam domain/function: PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 31841; Mature: 31710
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIKITTLIEDSKNEESELIEEHGLSMFINTPRCNIIFDTGASGNFIKNADKLNIDLHET CEEEEEEEEECCCCHHHHHHHHCCCEEEEECCCEEEEEECCCCCCEECCCCEEEEEEECC NYMILSHAHYDHCGGVRSFIENIKCYPELYVSKNFFGNSNKFKIGKDRENKYLGIDFDEK CEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCCEEEECCCCC YLIDNGIPINYVEEDILEIEPNIFIVTNFKEDNSFEEFTSNMVIKKGEGYILDKFKEEVA EEECCCCCCCHHCHHHEEECCCEEEEEECCCCCCHHHHHCCEEEECCCCEEHHHHHHHHE LAIDTYKGLVVLVGCSHVGIANILNNISKRLNKRIYAVLGGTHLIKCDENRINKTIEAFN EEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCEEEEEECHHHHHHHHHHHH KLDINIIGVSHCTGEFATMKLKELKDRFFLNNTGNILEI CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCEEEC >Mature Secondary Structure SIKITTLIEDSKNEESELIEEHGLSMFINTPRCNIIFDTGASGNFIKNADKLNIDLHET EEEEEEEEECCCCHHHHHHHHCCCEEEEECCCEEEEEECCCCCCEECCCCEEEEEEECC NYMILSHAHYDHCGGVRSFIENIKCYPELYVSKNFFGNSNKFKIGKDRENKYLGIDFDEK CEEEEEECCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCCCEEECCCCCCCEEEECCCCC YLIDNGIPINYVEEDILEIEPNIFIVTNFKEDNSFEEFTSNMVIKKGEGYILDKFKEEVA EEECCCCCCCHHCHHHEEECCCEEEEEECCCCCCHHHHHCCEEEECCCCEEHHHHHHHHE LAIDTYKGLVVLVGCSHVGIANILNNISKRLNKRIYAVLGGTHLIKCDENRINKTIEAFN EEEECCCCEEEEEECCCCCHHHHHHHHHHHHHHEEEEEECCEEEEEECHHHHHHHHHHHH KLDINIIGVSHCTGEFATMKLKELKDRFFLNNTGNILEI CCEEEEEEEECCCCCHHHHHHHHHHHHEEECCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]