| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
Click here to switch to the map view.
The map label for this gene is folD
Identifier: 170754644
GI number: 170754644
Start: 1298534
End: 1299382
Strand: Direct
Name: folD
Synonym: CLD_3397
Alternate gene names: 170754644
Gene position: 1298534-1299382 (Clockwise)
Preceding gene: 170756609
Following gene: 170754328
Centisome position: 32.81
GC content: 26.27
Gene sequence:
>849_bases ATGACTAAAATATTATATGGAAATGAAGTAGCTTTAAAAATAAAGGAAGATTTAAATTTAAGAATGGACAAATTAAAAGA AAAAAATATAATACCTAAGTTAGCAATTTTACGTATGGGAAATAAACAGGACGATATAGCCTATGAAAGAAGTATAATAA AAAGCTGTGAAAAACTAAACATAGAAACTAAGGTAGAAGAATTAAATGAAGATATATTAGAAGAAGATTTTTTAAAGTTA ATGGAAAATTTAAATAATGAAAAGGATATTCATGGTATATTAGTCTTTAGACCTTACCCTAAACATTTAAATGAAAATAT AATAAACTCTTCTATAGCATTAAATAAAGATGTGGATTGTATGCATCCTTTAAATTTAGAAAGGATATTTGAAGGTGATT TAGATGGAGTTATGCCTTGTACTCCAGAGGCTGTAATAGAAATATTAAAATATTATGATATAGATTTAAAAGGAAAGAAT ATAGTTATTATAAACAGAAGTATGGTAGTGGGCAAACCATTGAGTATGATGGTCTTATCTAATAATGCTACAGTTACTAT ATGTCATTCAAAAACTATAGATTTACCATCCATAACTAAAAAAGCAGATATAGTAGTGACAGCTATAGGAAAAGCTAAAT TAATAAAAGAGGAATATTTTAATGAAAATTCTATAATTATAGATGTAAGTATTAATGTAGATGAAAATGGAAAACTATGT GGAGATGTGGATTTTGAAAATGTAAAAGAAAAAGTAGGAGCTATAACTCCAGTTCCAAAAGGAGTAGGAAGTGTTACAAC TACCTTGTTATTAAAACACATAGTAGAAGCAGCAGAGAGAAATAGTTAA
Upstream 100 bases:
>100_bases ATTCTTTGGAAGAAGAAATCAACACCTTAGTTTCTAAATATTCAACTAAGGCAGATAAAGTTTATAGTTATGTAGAAAAT TTAATAAGGGGAAATGAATA
Downstream 100 bases:
>100_bases ATATAAAAATTAAAAAGTAAAGCCTGTATCTTATGTTAGTTTATATAGGATACAGGATTATTTTTCTTATAATAAATAAT ATATAAGATTTTATAGATTC
Product: methylenetetrahydrofolate dehydrogenase
Products: NA
Alternate protein names: Methylenetetrahydrofolate dehydrogenase; Methenyltetrahydrofolate cyclohydrolase [H]
Number of amino acids: Translated: 282; Mature: 281
Protein sequence:
>282_residues MTKILYGNEVALKIKEDLNLRMDKLKEKNIIPKLAILRMGNKQDDIAYERSIIKSCEKLNIETKVEELNEDILEEDFLKL MENLNNEKDIHGILVFRPYPKHLNENIINSSIALNKDVDCMHPLNLERIFEGDLDGVMPCTPEAVIEILKYYDIDLKGKN IVIINRSMVVGKPLSMMVLSNNATVTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNENSIIIDVSINVDENGKLC GDVDFENVKEKVGAITPVPKGVGSVTTTLLLKHIVEAAERNS
Sequences:
>Translated_282_residues MTKILYGNEVALKIKEDLNLRMDKLKEKNIIPKLAILRMGNKQDDIAYERSIIKSCEKLNIETKVEELNEDILEEDFLKL MENLNNEKDIHGILVFRPYPKHLNENIINSSIALNKDVDCMHPLNLERIFEGDLDGVMPCTPEAVIEILKYYDIDLKGKN IVIINRSMVVGKPLSMMVLSNNATVTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNENSIIIDVSINVDENGKLC GDVDFENVKEKVGAITPVPKGVGSVTTTLLLKHIVEAAERNS >Mature_281_residues TKILYGNEVALKIKEDLNLRMDKLKEKNIIPKLAILRMGNKQDDIAYERSIIKSCEKLNIETKVEELNEDILEEDFLKLM ENLNNEKDIHGILVFRPYPKHLNENIINSSIALNKDVDCMHPLNLERIFEGDLDGVMPCTPEAVIEILKYYDIDLKGKNI VIINRSMVVGKPLSMMVLSNNATVTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNENSIIIDVSINVDENGKLCG DVDFENVKEKVGAITPVPKGVGSVTTTLLLKHIVEAAERNS
Specific function: Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate [H]
COG id: COG0190
COG function: function code H; 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family [H]
Homologues:
Organism=Homo sapiens, GI222136639, Length=293, Percent_Identity=36.518771331058, Blast_Score=186, Evalue=3e-47, Organism=Homo sapiens, GI222418558, Length=293, Percent_Identity=36.1774744027304, Blast_Score=160, Evalue=2e-39, Organism=Homo sapiens, GI94721354, Length=293, Percent_Identity=34.1296928327645, Blast_Score=143, Evalue=1e-34, Organism=Escherichia coli, GI1786741, Length=277, Percent_Identity=33.5740072202166, Blast_Score=168, Evalue=3e-43, Organism=Caenorhabditis elegans, GI17568735, Length=291, Percent_Identity=32.6460481099656, Blast_Score=153, Evalue=9e-38, Organism=Saccharomyces cerevisiae, GI6319558, Length=287, Percent_Identity=36.9337979094077, Blast_Score=200, Evalue=2e-52, Organism=Saccharomyces cerevisiae, GI6321643, Length=269, Percent_Identity=36.8029739776952, Blast_Score=164, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6322933, Length=251, Percent_Identity=22.3107569721116, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI62472483, Length=288, Percent_Identity=34.375, Blast_Score=181, Evalue=4e-46, Organism=Drosophila melanogaster, GI45551871, Length=288, Percent_Identity=34.375, Blast_Score=181, Evalue=4e-46, Organism=Drosophila melanogaster, GI24645718, Length=288, Percent_Identity=34.375, Blast_Score=181, Evalue=5e-46, Organism=Drosophila melanogaster, GI17137370, Length=288, Percent_Identity=34.375, Blast_Score=181, Evalue=5e-46, Organism=Drosophila melanogaster, GI17136818, Length=297, Percent_Identity=31.6498316498317, Blast_Score=154, Evalue=8e-38, Organism=Drosophila melanogaster, GI17136816, Length=297, Percent_Identity=31.6498316498317, Blast_Score=153, Evalue=1e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016040 - InterPro: IPR000672 - InterPro: IPR020630 - InterPro: IPR020631 [H]
Pfam domain/function: PF00763 THF_DHG_CYH; PF02882 THF_DHG_CYH_C [H]
EC number: =1.5.1.5; =3.5.4.9 [H]
Molecular weight: Translated: 31685; Mature: 31554
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKILYGNEVALKIKEDLNLRMDKLKEKNIIPKLAILRMGNKQDDIAYERSIIKSCEKLN CCEEEECCEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC IETKVEELNEDILEEDFLKLMENLNNEKDIHGILVFRPYPKHLNENIINSSIALNKDVDC CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCEEECCCCCC MHPLNLERIFEGDLDGVMPCTPEAVIEILKYYDIDLKGKNIVIINRSMVVGKPLSMMVLS CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEECCCEEEEEECCEEECCCEEEEEEE NNATVTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNENSIIIDVSINVDENGKLC CCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEEECCCCCEE GDVDFENVKEKVGAITPVPKGVGSVTTTLLLKHIVEAAERNS CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TKILYGNEVALKIKEDLNLRMDKLKEKNIIPKLAILRMGNKQDDIAYERSIIKSCEKLN CEEEECCEEEEEEECCCCHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC IETKVEELNEDILEEDFLKLMENLNNEKDIHGILVFRPYPKHLNENIINSSIALNKDVDC CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHCCCEEECCCCCC MHPLNLERIFEGDLDGVMPCTPEAVIEILKYYDIDLKGKNIVIINRSMVVGKPLSMMVLS CCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEECCCEEEEEECCEEECCCEEEEEEE NNATVTICHSKTIDLPSITKKADIVVTAIGKAKLIKEEYFNENSIIIDVSINVDENGKLC CCCEEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHHHHCCCCCEEEEEEEEECCCCCEE GDVDFENVKEKVGAITPVPKGVGSVTTTLLLKHIVEAAERNS CCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA