| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754343
Identifier: 170754343
GI number: 170754343
Start: 3930066
End: 3931451
Strand: Reverse
Name: 170754343
Synonym: CLD_0857
Alternate gene names: NA
Gene position: 3931451-3930066 (Counterclockwise)
Preceding gene: 170755260
Following gene: 170757650
Centisome position: 99.32
GC content: 29.0
Gene sequence:
>1386_bases ATGAAAAAATATGATGTTATTATTGTTGGCGCTGGAGCTAGCGGTATATTTGCTGCTTATGAAATGTGCAAAAATAATAA TAAGCTAAATATATTAATGATTGAAAAGGGTCATGATTTAAAAAAAAGAAAATGTCCTATAGATGGCAAAAATATAAAGT CCTGTATACAATGTAATGTATGTAATATAATGAATGGATATGGTGGAGCAGGCACATTATCTGATGGTAAATATAACATT ACTAATAATTTTGGTGGAGATTTATATAAATATGTTGGTAGAGAAGAAGCATTAAGTTTAATGAATTATGTTGATGAGGT TTTATGTGAAATGGGTGGAAAAGATGCAAAACTATATTCAACATCTAATTCAGATTTAAAGAGAAAAGCTCTCCAAAATG ATTTGCATCTTTTAGATGCAAAGGTAAGGCATTTAGGAACAGATAGAAATATTAATATATTGTCTAATATATATGAATAT CTAAAAGATAAGATAGAAATGAAATTTGAATGTGAAGTTTTTGATATAAATAAAGTAAAAGGAGAATTTGTTGTAGATAC TAAAGAAGGAGAATTTTCTAGTGAGGATTTAATTTTAGCTACAGGAAGGTCAGGTTCAAAATGGATTTCTAATATATGTA AAAAACTTGGTATAAAAACAGAAAGTAATAGAGTAGATATAGGAGTGAGAGTTGAACTTCCAGCTCAGGTATTTTCTCAT ATAACAGATGAGGTTTATGAAAGTAAAATAGTATATAGAACAAAGAAATATGGAGATTTAGTTAGAACCTTTTGTATGAA TCCTTATGGGGAGGTAGTAAGTGAAAATACCAATGGAATAGTTACAGTTAATGGTCATAGTTATGCAAACCCAGATTTAC ACACAGAAAATACTAATTTTGCGTTATTAGTTTCTAATAGATTTACTGAACCTTTCAAAGAGAGTAATGAATATGGTGAA TCTATAGCAAAGCTAAGTAATATGTTAGGTGGGGGAGTATTAGTACAAAGATTTGGAGATTTAATAAAAGGAAGAAGAAC TAATGAAAAAAGAATGGCAAAAAGTTTTACAAGACCTACACTAAAAGCTACACCAGGAGATTTAAGCTTGGTGATTCCTA AAAGGCAGTTAGATGGCATTATAGAAATGATATATGCTTTAGATAATATAGCGCCAGGTACAGCAAATGAAGATACACTT TTATATGGAGTAGAAGTTAAATTCTATAATTCTAATGTAGAATTAAGTTCTAATCTAGAAACTCAAATAAAAGGATTATA TATTTTAGGGGATAGTTCAGGAGTTACTCATTCATTATCACAAGCCTCAGCTAGTGGAGTATATGCAGCAAGAATATTAA TGAAAAAACATAATGTCAATGTATAA
Upstream 100 bases:
>100_bases AAATACGAATAATAAATATAAAAAATATAAAAATATTCGTGAAATCTATTGAAAATATTTTAAACCTTTGTTATCATTAT ATAGCTGGAGGGGATAATTT
Downstream 100 bases:
>100_bases AGGAATAAAAATATTGCAGTTATAATTTAGCTGCAATATTTTATTTTTAAAATAATAAACGAACAATAATTAAATTTAAA TATGTAGCATTCGCTTTTTT
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: ORF1 [H]
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MKKYDVIIVGAGASGIFAAYEMCKNNNKLNILMIEKGHDLKKRKCPIDGKNIKSCIQCNVCNIMNGYGGAGTLSDGKYNI TNNFGGDLYKYVGREEALSLMNYVDEVLCEMGGKDAKLYSTSNSDLKRKALQNDLHLLDAKVRHLGTDRNINILSNIYEY LKDKIEMKFECEVFDINKVKGEFVVDTKEGEFSSEDLILATGRSGSKWISNICKKLGIKTESNRVDIGVRVELPAQVFSH ITDEVYESKIVYRTKKYGDLVRTFCMNPYGEVVSENTNGIVTVNGHSYANPDLHTENTNFALLVSNRFTEPFKESNEYGE SIAKLSNMLGGGVLVQRFGDLIKGRRTNEKRMAKSFTRPTLKATPGDLSLVIPKRQLDGIIEMIYALDNIAPGTANEDTL LYGVEVKFYNSNVELSSNLETQIKGLYILGDSSGVTHSLSQASASGVYAARILMKKHNVNV
Sequences:
>Translated_461_residues MKKYDVIIVGAGASGIFAAYEMCKNNNKLNILMIEKGHDLKKRKCPIDGKNIKSCIQCNVCNIMNGYGGAGTLSDGKYNI TNNFGGDLYKYVGREEALSLMNYVDEVLCEMGGKDAKLYSTSNSDLKRKALQNDLHLLDAKVRHLGTDRNINILSNIYEY LKDKIEMKFECEVFDINKVKGEFVVDTKEGEFSSEDLILATGRSGSKWISNICKKLGIKTESNRVDIGVRVELPAQVFSH ITDEVYESKIVYRTKKYGDLVRTFCMNPYGEVVSENTNGIVTVNGHSYANPDLHTENTNFALLVSNRFTEPFKESNEYGE SIAKLSNMLGGGVLVQRFGDLIKGRRTNEKRMAKSFTRPTLKATPGDLSLVIPKRQLDGIIEMIYALDNIAPGTANEDTL LYGVEVKFYNSNVELSSNLETQIKGLYILGDSSGVTHSLSQASASGVYAARILMKKHNVNV >Mature_461_residues MKKYDVIIVGAGASGIFAAYEMCKNNNKLNILMIEKGHDLKKRKCPIDGKNIKSCIQCNVCNIMNGYGGAGTLSDGKYNI TNNFGGDLYKYVGREEALSLMNYVDEVLCEMGGKDAKLYSTSNSDLKRKALQNDLHLLDAKVRHLGTDRNINILSNIYEY LKDKIEMKFECEVFDINKVKGEFVVDTKEGEFSSEDLILATGRSGSKWISNICKKLGIKTESNRVDIGVRVELPAQVFSH ITDEVYESKIVYRTKKYGDLVRTFCMNPYGEVVSENTNGIVTVNGHSYANPDLHTENTNFALLVSNRFTEPFKESNEYGE SIAKLSNMLGGGVLVQRFGDLIKGRRTNEKRMAKSFTRPTLKATPGDLSLVIPKRQLDGIIEMIYALDNIAPGTANEDTL LYGVEVKFYNSNVELSSNLETQIKGLYILGDSSGVTHSLSQASASGVYAARILMKKHNVNV
Specific function: Unknown
COG id: COG2509
COG function: function code R; Uncharacterized FAD-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 51219; Mature: 51219
Theoretical pI: Translated: 8.12; Mature: 8.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKYDVIIVGAGASGIFAAYEMCKNNNKLNILMIEKGHDLKKRKCPIDGKNIKSCIQCNV CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCCCCCCHHHHHHCCH CNIMNGYGGAGTLSDGKYNITNNFGGDLYKYVGREEALSLMNYVDEVLCEMGGKDAKLYS HHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEE TSNSDLKRKALQNDLHLLDAKVRHLGTDRNINILSNIYEYLKDKIEMKFECEVFDINKVK CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEECCC GEFVVDTKEGEFSSEDLILATGRSGSKWISNICKKLGIKTESNRVDIGVRVELPAQVFSH CCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHH ITDEVYESKIVYRTKKYGDLVRTFCMNPYGEVVSENTNGIVTVNGHSYANPDLHTENTNF HHHHHHHHHHEEEHHHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCE ALLVSNRFTEPFKESNEYGESIAKLSNMLGGGVLVQRFGDLIKGRRTNEKRMAKSFTRPT EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC LKATPGDLSLVIPKRQLDGIIEMIYALDNIAPGTANEDTLLYGVEVKFYNSNVELSSNLE CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCEEECCCCC TQIKGLYILGDSSGVTHSLSQASASGVYAARILMKKHNVNV EEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC >Mature Secondary Structure MKKYDVIIVGAGASGIFAAYEMCKNNNKLNILMIEKGHDLKKRKCPIDGKNIKSCIQCNV CCCEEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECCCCCHHHCCCCCCCCHHHHHHCCH CNIMNGYGGAGTLSDGKYNITNNFGGDLYKYVGREEALSLMNYVDEVLCEMGGKDAKLYS HHHHCCCCCCCCCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEE TSNSDLKRKALQNDLHLLDAKVRHLGTDRNINILSNIYEYLKDKIEMKFECEVFDINKVK CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEEEECCC GEFVVDTKEGEFSSEDLILATGRSGSKWISNICKKLGIKTESNRVDIGVRVELPAQVFSH CCEEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECHHHHHHH ITDEVYESKIVYRTKKYGDLVRTFCMNPYGEVVSENTNGIVTVNGHSYANPDLHTENTNF HHHHHHHHHHEEEHHHHHHHHHHHHCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCE ALLVSNRFTEPFKESNEYGESIAKLSNMLGGGVLVQRFGDLIKGRRTNEKRMAKSFTRPT EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCC LKATPGDLSLVIPKRQLDGIIEMIYALDNIAPGTANEDTLLYGVEVKFYNSNVELSSNLE CCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEEECCCEEECCCCC TQIKGLYILGDSSGVTHSLSQASASGVYAARILMKKHNVNV EEEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396545 [H]