| Definition | Clostridium botulinum B1 str. Okra, complete genome. |
|---|---|
| Accession | NC_010516 |
| Length | 3,958,233 |
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The map label for this gene is 170754296
Identifier: 170754296
GI number: 170754296
Start: 3281056
End: 3281490
Strand: Reverse
Name: 170754296
Synonym: CLD_1513
Alternate gene names: NA
Gene position: 3281490-3281056 (Counterclockwise)
Preceding gene: 170755325
Following gene: 170757790
Centisome position: 82.9
GC content: 27.36
Gene sequence:
>435_bases ATGGACTTAAATAGAATAAAAGATTTTAAAGTAGATTTGCTTTATGAAGATAGAAAAAATACAGGTGGCGTAATAACTAA CTATAAGCCACCTCGTCCTGCTTATTTTCGTAAGGGTATTAGAACAGTACAAGGATACACATATTTTGAAAAAAATATTA AAAGTGATTGCATTATTGAATTTACAGTTGCTTTTAATATAAAAGGAGAAAATGATGAGGAGACACAAAGTAATATAACT AAGTTTTTAGACTTTAGAAAAAGTTATTCAGGTAGATTCATATTTGTAGATGAATTTGGAATTCAATACAAAGGATATTT ACAAAATAAGTTTGAGATAGATACTCCTATCGAAGGTGATATATATTATATAAATTTAGAGCTTTTATGTAATCATGAAG CTAGTGGATGGGTGAAAGATAATGGCAAAATGTAA
Upstream 100 bases:
>100_bases GATAGCTAATGAATTTAAACAAATGACAGAAAGTTCTATGAAAAATGTTATGACAGGATTATTTATGAATGATGTATTGA GAGATTAGGGGGTGGCTTAT
Downstream 100 bases:
>100_bases AGTAGAATTTTATAAAAAAAATGGCTACCAAGCCTTTGAAAATGGTGATGCTAATAAAATAACCTTAGAACATTGTTTAG TGTCAGTTAAAATAAATAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 144; Mature: 144
Protein sequence:
>144_residues MDLNRIKDFKVDLLYEDRKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKNIKSDCIIEFTVAFNIKGENDEETQSNIT KFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGDIYYINLELLCNHEASGWVKDNGKM
Sequences:
>Translated_144_residues MDLNRIKDFKVDLLYEDRKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKNIKSDCIIEFTVAFNIKGENDEETQSNIT KFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGDIYYINLELLCNHEASGWVKDNGKM >Mature_144_residues MDLNRIKDFKVDLLYEDRKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKNIKSDCIIEFTVAFNIKGENDEETQSNIT KFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGDIYYINLELLCNHEASGWVKDNGKM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16960; Mature: 16960
Theoretical pI: Translated: 5.98; Mature: 5.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLNRIKDFKVDLLYEDRKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKNIKSDCIIE CCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEE FTVAFNIKGENDEETQSNITKFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGD EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEECCCCCCC IYYINLELLCNHEASGWVKDNGKM EEEEEEEEEECCCCCCEEECCCCC >Mature Secondary Structure MDLNRIKDFKVDLLYEDRKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKNIKSDCIIE CCCCCCCCEEEEEEEECCCCCCCEEECCCCCCCHHHHHHHHHHCCEEEECCCCCCCEEEE FTVAFNIKGENDEETQSNITKFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGD EEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCEEEECCCCCCC IYYINLELLCNHEASGWVKDNGKM EEEEEEEEEECCCCCCEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA