Definition Clostridium botulinum B1 str. Okra, complete genome.
Accession NC_010516
Length 3,958,233

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The map label for this gene is spoVAD [H]

Identifier: 170754229

GI number: 170754229

Start: 3329162

End: 3330169

Strand: Reverse

Name: spoVAD [H]

Synonym: CLD_1455

Alternate gene names: 170754229

Gene position: 3330169-3329162 (Counterclockwise)

Preceding gene: 170757434

Following gene: 170755705

Centisome position: 84.13

GC content: 33.13

Gene sequence:

>1008_bases
ATGAATAAAAAAATTGGTGAGCAAACTTTTAAATTAGATAGTAAACCTAAAATAATAGGTACTACTAGTATAGTTGGACC
TAAAGAGGGAGAGGGGCCTTTAAAAGATTATTTTGATGTAATATTAAAAGATGATTTATTTAATCAGGAAAGTTTTGAGA
AGGCAGAAAGTGCAATGTTATCTACTGCTATCTCAGATGTTATAAAAAAGTGTAATTTAAAGGATAAAGATATAGATATG
TTATGTGCTGGAGATCTATTAAATCAAACTATATCCTCAAGTTTTGCAGCAAGAAATTTAGATATACCTTTTATAGGATT
GTATGGAGCTTGTTCTACAATGACAGAATCATTAAGTGTGGCATCTATGCTAATGGATGGAGAATTTGCAAATTATGCTG
TAGCAGCTACTTCTTCACATTTTTCAGCAGCAGAAAGACAGTTTAGATTTCCATTAGAATATGGAGCACAAAGATCTCCA
ACTTCACAGTGGACAGTTACTGGAGCCGGTGCTATGGTTTTAGGTAAAGAAGGGAATTATCCCTGTATAACCTATGTAAC
TATAGGAAAAGTAAAGGATTATGGGGTTAAAAATGTAGATAAGATGGGATCATCTATGGTACCAGCAGCAGTAGCTACCA
TATATCAACATTTTAAGGATACAGGAAGAACTCCAGAAGATTATGATATTATTGCAACAGGTGATTTAGGCAAGGTTGGT
AGAGAATTAACAGAAAAACTTTTATTAAAACATGGATATAATATAAAGGATGTATATGTAGATTGTGGAGAAATAATATT
TGATAATGAAAAACAGGATACTGAAGCTGGTGGAAGTGGATGTGGATGCTCTGCAGTAGTAGGATGTGGATACATATATA
AAAACATATTAAGTGGTAAATTTAAGAGAGCTTTATTAGTTTCTACAGGTGCATTACTGAGCACTACATCATCACAGCAG
GGAGAGAGTATACCAGGTATTGCTCATGCAGTTGTTATAGAAAGATAA

Upstream 100 bases:

>100_bases
GCTGGACCAGTTTTAGTTTATGGTATAGGCTCTTCAGTTATAGTAGGAATAATATACTTTATAATGAGTAAACTTTAATT
TAGAATTGGAGGAGTTTACA

Downstream 100 bases:

>100_bases
AAAGGAGGGGTTTTCATGGATTATTTAAGTGCTTTTATAGTAGGTGGAGCAATCTGTGTTATAGCTCAAATATTAATGGA
TACCACGCAATTAACTCCAG

Product: stage V sporulation protein AD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAMLSTAISDVIKKCNLKDKDIDM
LCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSVASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSP
TSQWTVTGAGAMVLGKEGNYPCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG
RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGKFKRALLVSTGALLSTTSSQQ
GESIPGIAHAVVIER

Sequences:

>Translated_335_residues
MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAMLSTAISDVIKKCNLKDKDIDM
LCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSVASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSP
TSQWTVTGAGAMVLGKEGNYPCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG
RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGKFKRALLVSTGALLSTTSSQQ
GESIPGIAHAVVIER
>Mature_335_residues
MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAMLSTAISDVIKKCNLKDKDIDM
LCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSVASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSP
TSQWTVTGAGAMVLGKEGNYPCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG
RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGKFKRALLVSTGALLSTTSSQQ
GESIPGIAHAVVIER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010894
- InterPro:   IPR016039
- InterPro:   IPR016038 [H]

Pfam domain/function: PF07451 SpoVAD [H]

EC number: NA

Molecular weight: Translated: 36087; Mature: 36087

Theoretical pI: Translated: 5.25; Mature: 5.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAML
CCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
STAISDVIKKCNLKDKDIDMLCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSV
HHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHH
ASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSPTSQWTVTGAGAMVLGKEGNY
HHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCEEEECCCEEEEECCCCC
PCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG
CEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGK
HHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FKRALLVSTGALLSTTSSQQGESIPGIAHAVVIER
HHHHHEEECCHHHCCCCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MNKKIGEQTFKLDSKPKIIGTTSIVGPKEGEGPLKDYFDVILKDDLFNQESFEKAESAML
CCCCCCCHHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
STAISDVIKKCNLKDKDIDMLCAGDLLNQTISSSFAARNLDIPFIGLYGACSTMTESLSV
HHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHH
ASMLMDGEFANYAVAATSSHFSAAERQFRFPLEYGAQRSPTSQWTVTGAGAMVLGKEGNY
HHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHCCCCCCCCCEEEECCCEEEEECCCCC
PCITYVTIGKVKDYGVKNVDKMGSSMVPAAVATIYQHFKDTGRTPEDYDIIATGDLGKVG
CEEEEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHH
RELTEKLLLKHGYNIKDVYVDCGEIIFDNEKQDTEAGGSGCGCSAVVGCGYIYKNILSGK
HHHHHHHHHHCCCCCEEEEEECCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
FKRALLVSTGALLSTTSSQQGESIPGIAHAVVIER
HHHHHEEECCHHHCCCCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3926949; 8969508; 9384377 [H]