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The map label for this gene is yciR [C]

Identifier: 170751805

GI number: 170751805

Start: 5742076

End: 5744103

Strand: Reverse

Name: yciR [C]

Synonym: Mrad2831_5435

Alternate gene names: 170751805

Gene position: 5744103-5742076 (Counterclockwise)

Preceding gene: 170751808

Following gene: 170751803

Centisome position: 94.51

GC content: 70.51

Gene sequence:

>2028_bases
ATGATCGTTCGGGACCAGGAGAGGTCCGTGCCGGGTTCATCCGGCTCCGGTGATTCTCTCGACCCTGCGGATCCGAGGTG
GAACGCGCTGATCCGGCGGGACCAGCTGGACGCGATGCGCGGAAGCGTGCTGGCCGCCATACCGGTCAACATGCTGCTCG
GCCTGGCGAGCATTTTGGTCGCCTATCGGAGCGGGCACGGCACCGTGGGGGCCGTCTGGTTCGCGGCCTCGACCAGCGTC
AATCTCCTGCGCATCGCCCTCTGCCGGATTCCCTGCCTGGGCCTGGCGCTGACCGCCGACATGACGCCGAGCCTCGCCGC
GGCCGCCGCGCGCTCCGTCGACCGGCACCTGCGCGCCTGCACGTTCGCCGCATTCCTCTCCGGACTGGTCTGGGCCTGCC
AGCCGCTCCTGTGCGACGGCTACACCACCGCCGAGACCCTGTTCTATCTCACGATCACCTGCGGCGTGACCGCGGGGGCG
GTGACGCACGGGACCGCCTACGCGCGCATCCCGCTCGCCTTCATCGCCCTGCCGCTGCTGTCGGTCACGGCCTGCCTCGC
CTATGCCGGCGACTTCGACCGGAACTGCCTCGCCGCCTGTGTGCTGCTCTACTTCCTCGCCCTGACGCACACGGCGTTCC
GGAGCGAGGCGGTGTTCCGCGATGCGAGCCGGCTCAAGAACGAGGCCCACGCCCTCGCCCGCTCGCGCGCCGAGGCCCAT
GCCAGCGCGAGCGCCCTCGTGGACGAGATGCGGTGGCGCGCCACGCACGACGATCTCACCGGCCTGCTGAACCGCGCGGG
CTTCCTCCAGGCGACGGAGAACCGGCTCCGCACCGGGACACTCAGCCTGCTGATGCTCGACCTCGACGGGTTCAAGTTCG
TCAACGACGTCTACGGCCACAAGGCGGGAGACCGGGTGCTCGTCGAGGTGGCGCGCCGGCTGAACGACGCGCTCCCGGAG
AACGGTCTCACGGCCCGGCTGGGCGGCGACGAGTTCGCCGTGCTGTACGATCCCGTGACGTCGGGCGTGCCCGACGCCGT
CATGGCGGCGAACCTCATCACCGCGGTGTCGCAGCCGTTCGACGGTTTCGACGCGGGTCGCCTCGGGGTCAGCATCGGCG
TCCACGCCAGTCGGGAGCCCAGCCTGACCGAGATGCTGAGCTGCGCCGACGAGGCGCTCTACGCCGCCAAGGCTGCCGGG
CGGAACCGCTTCCGCGTGTTCGATTCGAGCCTGCGCGAGCGGCTGCAGATGCGGCGGGACCTGGAGCGCGACCTGTCGCA
GGCCCTGGTCGAGAACGCCCCGAAGGTCTGGTTCCAGCCGATCTACGCGGGCGACGGCCGGACCCTGGTCGGGCTGGAAG
CTCTGATCCGCTGGGAGCATCCGCGACTCGGCTGGATCGCGCCCCCGGACCTGATCGCCGCCGCCGCGATGGCGGGCCTG
ACAGAGTCGCTGCTCCGCTACATCCTCGAGCAGGTCTGCGCGATGCTGGAGATCCTGCATCGCCGCGGCCTGGGCAGCGT
CCGCGTGGCGATGAACGTCTCCCCCCGGGAGATGGCACAGGTGCCGGTCGACGAGATCGTCATCGAGCGGCTGAGCCTCC
TCGGCCTGCCGCCCACCATGCTGGAGATCGAGATCACCGAGGAGACGGCCCTCGACATCGGCGCGGTGCAGGGAAAGCTG
CAGGCGCTGTCCCGCGCCGGCATCCGGGTCGCCCTGGACGATTTCGGGATCGGCTACTCGTCGCTCTCCTCGCTGCGGCA
GCTCAAGGCGGACCGGATCAAGATCGACCGGAGCTTCGTCACCGGCCTGGGGGCGAGCGACGACAAGCGCGGGCTCGTCC
TCGCCGTCCTCGGCCTCGGCCGGCTGCTCGGCCTCGACGTCGTGGCGGAGGGCGTCGAGTCGGCCGAGGACCTGAACATC
CTGCAGGCGATGGGCTGCCCGTTCCTGCAGGGCTACCATCTCGGCCGCCCGATGCCCGTAGCAGACTTGGAAGCCACCCT
GCTCGGCACGCGCATCATCGCCGCCTGA

Upstream 100 bases:

>100_bases
GGCGCGCGAAAGGCGCGGGATCGCGCGCGGCGAACGTTGATCGTTCAACGATATCTTACGATTCGCTGCCATGAGTCCCT
CATCTTCGAGTGGACGTGCA

Downstream 100 bases:

>100_bases
CCCGGCGCCGGTGCGCGGAGCGGTCACGGCCGCCAGCCCCCCTCAGAAACGCTCCGCATCCGCGGGATCGCGGGACGGGA
GCCGGCGCGCCGCCGCGCGC

Product: diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 675; Mature: 675

Protein sequence:

>675_residues
MIVRDQERSVPGSSGSGDSLDPADPRWNALIRRDQLDAMRGSVLAAIPVNMLLGLASILVAYRSGHGTVGAVWFAASTSV
NLLRIALCRIPCLGLALTADMTPSLAAAAARSVDRHLRACTFAAFLSGLVWACQPLLCDGYTTAETLFYLTITCGVTAGA
VTHGTAYARIPLAFIALPLLSVTACLAYAGDFDRNCLAACVLLYFLALTHTAFRSEAVFRDASRLKNEAHALARSRAEAH
ASASALVDEMRWRATHDDLTGLLNRAGFLQATENRLRTGTLSLLMLDLDGFKFVNDVYGHKAGDRVLVEVARRLNDALPE
NGLTARLGGDEFAVLYDPVTSGVPDAVMAANLITAVSQPFDGFDAGRLGVSIGVHASREPSLTEMLSCADEALYAAKAAG
RNRFRVFDSSLRERLQMRRDLERDLSQALVENAPKVWFQPIYAGDGRTLVGLEALIRWEHPRLGWIAPPDLIAAAAMAGL
TESLLRYILEQVCAMLEILHRRGLGSVRVAMNVSPREMAQVPVDEIVIERLSLLGLPPTMLEIEITEETALDIGAVQGKL
QALSRAGIRVALDDFGIGYSSLSSLRQLKADRIKIDRSFVTGLGASDDKRGLVLAVLGLGRLLGLDVVAEGVESAEDLNI
LQAMGCPFLQGYHLGRPMPVADLEATLLGTRIIAA

Sequences:

>Translated_675_residues
MIVRDQERSVPGSSGSGDSLDPADPRWNALIRRDQLDAMRGSVLAAIPVNMLLGLASILVAYRSGHGTVGAVWFAASTSV
NLLRIALCRIPCLGLALTADMTPSLAAAAARSVDRHLRACTFAAFLSGLVWACQPLLCDGYTTAETLFYLTITCGVTAGA
VTHGTAYARIPLAFIALPLLSVTACLAYAGDFDRNCLAACVLLYFLALTHTAFRSEAVFRDASRLKNEAHALARSRAEAH
ASASALVDEMRWRATHDDLTGLLNRAGFLQATENRLRTGTLSLLMLDLDGFKFVNDVYGHKAGDRVLVEVARRLNDALPE
NGLTARLGGDEFAVLYDPVTSGVPDAVMAANLITAVSQPFDGFDAGRLGVSIGVHASREPSLTEMLSCADEALYAAKAAG
RNRFRVFDSSLRERLQMRRDLERDLSQALVENAPKVWFQPIYAGDGRTLVGLEALIRWEHPRLGWIAPPDLIAAAAMAGL
TESLLRYILEQVCAMLEILHRRGLGSVRVAMNVSPREMAQVPVDEIVIERLSLLGLPPTMLEIEITEETALDIGAVQGKL
QALSRAGIRVALDDFGIGYSSLSSLRQLKADRIKIDRSFVTGLGASDDKRGLVLAVLGLGRLLGLDVVAEGVESAEDLNI
LQAMGCPFLQGYHLGRPMPVADLEATLLGTRIIAA
>Mature_675_residues
MIVRDQERSVPGSSGSGDSLDPADPRWNALIRRDQLDAMRGSVLAAIPVNMLLGLASILVAYRSGHGTVGAVWFAASTSV
NLLRIALCRIPCLGLALTADMTPSLAAAAARSVDRHLRACTFAAFLSGLVWACQPLLCDGYTTAETLFYLTITCGVTAGA
VTHGTAYARIPLAFIALPLLSVTACLAYAGDFDRNCLAACVLLYFLALTHTAFRSEAVFRDASRLKNEAHALARSRAEAH
ASASALVDEMRWRATHDDLTGLLNRAGFLQATENRLRTGTLSLLMLDLDGFKFVNDVYGHKAGDRVLVEVARRLNDALPE
NGLTARLGGDEFAVLYDPVTSGVPDAVMAANLITAVSQPFDGFDAGRLGVSIGVHASREPSLTEMLSCADEALYAAKAAG
RNRFRVFDSSLRERLQMRRDLERDLSQALVENAPKVWFQPIYAGDGRTLVGLEALIRWEHPRLGWIAPPDLIAAAAMAGL
TESLLRYILEQVCAMLEILHRRGLGSVRVAMNVSPREMAQVPVDEIVIERLSLLGLPPTMLEIEITEETALDIGAVQGKL
QALSRAGIRVALDDFGIGYSSLSSLRQLKADRIKIDRSFVTGLGASDDKRGLVLAVLGLGRLLGLDVVAEGVESAEDLNI
LQAMGCPFLQGYHLGRPMPVADLEATLLGTRIIAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=426, Percent_Identity=33.0985915492958, Blast_Score=202, Evalue=6e-53,
Organism=Escherichia coli, GI87081921, Length=411, Percent_Identity=27.4939172749392, Blast_Score=153, Evalue=4e-38,
Organism=Escherichia coli, GI226510982, Length=433, Percent_Identity=27.7136258660508, Blast_Score=145, Evalue=1e-35,
Organism=Escherichia coli, GI87081980, Length=262, Percent_Identity=31.2977099236641, Blast_Score=126, Evalue=4e-30,
Organism=Escherichia coli, GI1790496, Length=245, Percent_Identity=29.7959183673469, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=33.6170212765957, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=31.3559322033898, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1788502, Length=241, Percent_Identity=29.4605809128631, Blast_Score=114, Evalue=2e-26,
Organism=Escherichia coli, GI87082096, Length=430, Percent_Identity=26.9767441860465, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=30.0395256916996, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1787055, Length=427, Percent_Identity=22.4824355971897, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=28.0172413793103, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787802, Length=173, Percent_Identity=36.9942196531792, Blast_Score=96, Evalue=8e-21,
Organism=Escherichia coli, GI1788956, Length=206, Percent_Identity=35.4368932038835, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI87081881, Length=165, Percent_Identity=38.7878787878788, Blast_Score=89, Evalue=1e-18,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=36.6863905325444, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1788381, Length=444, Percent_Identity=25, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=33.7278106508876, Blast_Score=83, Evalue=7e-17,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=34.3373493975904, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=34.6153846153846, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=269, Percent_Identity=27.8810408921933, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=162, Percent_Identity=30.2469135802469, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787816, Length=170, Percent_Identity=30.5882352941176, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI1787410, Length=154, Percent_Identity=26.6233766233766, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 72566; Mature: 72566

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRDQERSVPGSSGSGDSLDPADPRWNALIRRDQLDAMRGSVLAAIPVNMLLGLASILV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AYRSGHGTVGAVWFAASTSVNLLRIALCRIPCLGLALTADMTPSLAAAAARSVDRHLRAC
HHHCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHHHHHHHHH
TFAAFLSGLVWACQPLLCDGYTTAETLFYLTITCGVTAGAVTHGTAYARIPLAFIALPLL
HHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHH
SVTACLAYAGDFDRNCLAACVLLYFLALTHTAFRSEAVFRDASRLKNEAHALARSRAEAH
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASASALVDEMRWRATHDDLTGLLNRAGFLQATENRLRTGTLSLLMLDLDGFKFVNDVYGH
HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEEECCCHHHHHHHHCC
KAGDRVLVEVARRLNDALPENGLTARLGGDEFAVLYDPVTSGVPDAVMAANLITAVSQPF
CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC
DGFDAGRLGVSIGVHASREPSLTEMLSCADEALYAAKAAGRNRFRVFDSSLRERLQMRRD
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LERDLSQALVENAPKVWFQPIYAGDGRTLVGLEALIRWEHPRLGWIAPPDLIAAAAMAGL
HHHHHHHHHHHCCCCCEEEEEEECCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
TESLLRYILEQVCAMLEILHRRGLGSVRVAMNVSPREMAQVPVDEIVIERLSLLGLPPTM
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCCE
LEIEITEETALDIGAVQGKLQALSRAGIRVALDDFGIGYSSLSSLRQLKADRIKIDRSFV
EEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TGLGASDDKRGLVLAVLGLGRLLGLDVVAEGVESAEDLNILQAMGCPFLQGYHLGRPMPV
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCH
ADLEATLLGTRIIAA
HHHHHHHHHHHHHCC
>Mature Secondary Structure
MIVRDQERSVPGSSGSGDSLDPADPRWNALIRRDQLDAMRGSVLAAIPVNMLLGLASILV
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AYRSGHGTVGAVWFAASTSVNLLRIALCRIPCLGLALTADMTPSLAAAAARSVDRHLRAC
HHHCCCCCEEEEEEECCCCHHHHHHHHHHCCHHHEEEECCCCHHHHHHHHHHHHHHHHHH
TFAAFLSGLVWACQPLLCDGYTTAETLFYLTITCGVTAGAVTHGTAYARIPLAFIALPLL
HHHHHHHHHHHHHHHHHCCCCCHHHHEEEEEEECCCCCCCHHCCCHHHHHHHHHHHHHHH
SVTACLAYAGDFDRNCLAACVLLYFLALTHTAFRSEAVFRDASRLKNEAHALARSRAEAH
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASASALVDEMRWRATHDDLTGLLNRAGFLQATENRLRTGTLSLLMLDLDGFKFVNDVYGH
HHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHCEEEEEEEECCCHHHHHHHHCC
KAGDRVLVEVARRLNDALPENGLTARLGGDEFAVLYDPVTSGVPDAVMAANLITAVSQPF
CCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCC
DGFDAGRLGVSIGVHASREPSLTEMLSCADEALYAAKAAGRNRFRVFDSSLRERLQMRRD
CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LERDLSQALVENAPKVWFQPIYAGDGRTLVGLEALIRWEHPRLGWIAPPDLIAAAAMAGL
HHHHHHHHHHHCCCCCEEEEEEECCCCEEHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
TESLLRYILEQVCAMLEILHRRGLGSVRVAMNVSPREMAQVPVDEIVIERLSLLGLPPTM
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCCE
LEIEITEETALDIGAVQGKLQALSRAGIRVALDDFGIGYSSLSSLRQLKADRIKIDRSFV
EEEEECHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
TGLGASDDKRGLVLAVLGLGRLLGLDVVAEGVESAEDLNILQAMGCPFLQGYHLGRPMPV
HCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCH
ADLEATLLGTRIIAA
HHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]