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The map label for this gene is cspA [C]

Identifier: 170751403

GI number: 170751403

Start: 5339405

End: 5339614

Strand: Direct

Name: cspA [C]

Synonym: Mrad2831_5022

Alternate gene names: 170751403

Gene position: 5339405-5339614 (Clockwise)

Preceding gene: 170751402

Following gene: 170751404

Centisome position: 87.85

GC content: 66.19

Gene sequence:

>210_bases
ATGAGCACCGGAACCGTCAAGTGGTTCAACGAGACCAAGGGCTACGGCTTCATCCAGCCGGATGACGGCGGCAAGGACGT
GTTCGTCCACATCTCGGCCGTCGAGCGCGCCGGCCTGCGCGGCCTGAACGAGGGCCAGAAGGTCTCCTACGAGCTGGAGA
CCGACCGTCGCAGCGGCAAGCAGTCCGCCGGTCAGCTCCAGACGGCCTGA

Upstream 100 bases:

>100_bases
AGGGCGGTTCTGACTTTCCTATCGCTATCGGTCGATGCCGGCGCCCGCTCCTTCGGGAGGGCGCCATCTCTCACTATGCC
TGCGAAGATCAAGGACTTCC

Downstream 100 bases:

>100_bases
TCGCCGTCCTCAGCGTTTCTCCGGAAGCCGCTCCTCTGGGAGCGGCTTCTTCGTATCTGCCGTCGTGTTTCTACTTTCCC
CTCTGCGGGTGACGGTCTTC

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGKQSAGQLQTA

Sequences:

>Translated_69_residues
MSTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGKQSAGQLQTA
>Mature_68_residues
STGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGKQSAGQLQTA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=52, Percent_Identity=63.4615384615385, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI2367114, Length=55, Percent_Identity=58.1818181818182, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1786841, Length=63, Percent_Identity=52.3809523809524, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1787839, Length=52, Percent_Identity=59.6153846153846, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1788126, Length=54, Percent_Identity=55.5555555555556, Blast_Score=71, Evalue=1e-14,
Organism=Escherichia coli, GI1787834, Length=51, Percent_Identity=54.9019607843137, Blast_Score=65, Evalue=6e-13,
Organism=Escherichia coli, GI1787107, Length=62, Percent_Identity=43.5483870967742, Blast_Score=63, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24658520, Length=54, Percent_Identity=46.2962962962963, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7548; Mature: 7417

Theoretical pI: Translated: 7.54; Mature: 7.54

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGK
CCCCCEEECCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
QSAGQLQTA
CCCCCCCCC
>Mature Secondary Structure 
STGTVKWFNETKGYGFIQPDDGGKDVFVHISAVERAGLRGLNEGQKVSYELETDRRSGK
CCCCEEECCCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEEECCCCCCCC
QSAGQLQTA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]