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The map label for this gene is ybiS [H]

Identifier: 170751396

GI number: 170751396

Start: 5333944

End: 5334624

Strand: Direct

Name: ybiS [H]

Synonym: Mrad2831_5015

Alternate gene names: 170751396

Gene position: 5333944-5334624 (Clockwise)

Preceding gene: 170751394

Following gene: 170751398

Centisome position: 87.76

GC content: 68.28

Gene sequence:

>681_bases
ATGATCGCCACGCTTCCCTCGGCCTGGAGCCGCCTGCGCCGGATCGTTCTCTCGCGAGTCCTCCTCGCCGTCGTGGCGAT
CGCCCCCCTGGCGGCGTGCCAGACCCGTCCGGTCCAAGTTGCCCAGGACGACGAGTCGGCCTGGTACATCGGCAGCAAAC
CCGACAAGCCCTTCGATATTCCGCTGGTCGACACGCAGCGCCTCGATCCGAAGTATCGCCGGCAGCAGGTCAGCTACAAC
GGTCCCGAGCAGCCGGGGACGATCGTGGTCGACATCGACAAGCGTCAGCTCGTCCTCGTCCAGGCCGACGGCACGGCGAT
GCAGTACGGGGTCGGTGTGGGCAAGGCCGGCTTCTCCTGGAAGGGCGAGGCGCGGGTCGGGCGCAAGGGCGTCTGGCCGG
ACTGGAGCCCGACCGTCACGATGGTCTCGCTGCATCCCGACCTGCCGCGCACCCGGAAGGGCGGCCTGGACAACCCCCTC
GGCGCCCGCGCCCTCTACCTCTACCAGGGCAACCGCGACATCCTGTTCCGCATCCACGGCACCAACGAGCCCTGGAGCAT
CGGCGAGCAGATGTCGTCGGGCTGCGTCCGGATGCTGAACGAGGATATCGCCGACCTGTACGAGCGCGTGCCGGTGGGCA
CCCGCGTTCTCATCAAGCGCAACGGCAAGTACCGGACCTGA

Upstream 100 bases:

>100_bases
AGCGGCCCGCGCGCGGCCGGCTGCGGCGGAAAAGCTACATCGTCACAGGCGCGGAGAAGGTAGGCATGGCGCGACGACCG
TATCCCGCACGACAGGACCT

Downstream 100 bases:

>100_bases
GCGGCCGACGCCGATCGCCGGGCCGGTCAGCCGGCCGGCGCTGCCGCGGCGGACGCGTCGCGGACTTCTCCGGAGACGCG
TCCGGCGAGGCGGGCCAGAG

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MIATLPSAWSRLRRIVLSRVLLAVVAIAPLAACQTRPVQVAQDDESAWYIGSKPDKPFDIPLVDTQRLDPKYRRQQVSYN
GPEQPGTIVVDIDKRQLVLVQADGTAMQYGVGVGKAGFSWKGEARVGRKGVWPDWSPTVTMVSLHPDLPRTRKGGLDNPL
GARALYLYQGNRDILFRIHGTNEPWSIGEQMSSGCVRMLNEDIADLYERVPVGTRVLIKRNGKYRT

Sequences:

>Translated_226_residues
MIATLPSAWSRLRRIVLSRVLLAVVAIAPLAACQTRPVQVAQDDESAWYIGSKPDKPFDIPLVDTQRLDPKYRRQQVSYN
GPEQPGTIVVDIDKRQLVLVQADGTAMQYGVGVGKAGFSWKGEARVGRKGVWPDWSPTVTMVSLHPDLPRTRKGGLDNPL
GARALYLYQGNRDILFRIHGTNEPWSIGEQMSSGCVRMLNEDIADLYERVPVGTRVLIKRNGKYRT
>Mature_226_residues
MIATLPSAWSRLRRIVLSRVLLAVVAIAPLAACQTRPVQVAQDDESAWYIGSKPDKPFDIPLVDTQRLDPKYRRQQVSYN
GPEQPGTIVVDIDKRQLVLVQADGTAMQYGVGVGKAGFSWKGEARVGRKGVWPDWSPTVTMVSLHPDLPRTRKGGLDNPL
GARALYLYQGNRDILFRIHGTNEPWSIGEQMSSGCVRMLNEDIADLYERVPVGTRVLIKRNGKYRT

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787040, Length=139, Percent_Identity=36.6906474820144, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1788299, Length=147, Percent_Identity=35.3741496598639, Blast_Score=77, Evalue=7e-16,
Organism=Escherichia coli, GI1787968, Length=141, Percent_Identity=36.1702127659575, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI1787356, Length=119, Percent_Identity=34.453781512605, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 25224; Mature: 25224

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIATLPSAWSRLRRIVLSRVLLAVVAIAPLAACQTRPVQVAQDDESAWYIGSKPDKPFDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCC
PLVDTQRLDPKYRRQQVSYNGPEQPGTIVVDIDKRQLVLVQADGTAMQYGVGVGKAGFSW
CCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCC
KGEARVGRKGVWPDWSPTVTMVSLHPDLPRTRKGGLDNPLGARALYLYQGNRDILFRIHG
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
TNEPWSIGEQMSSGCVRMLNEDIADLYERVPVGTRVLIKRNGKYRT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
>Mature Secondary Structure
MIATLPSAWSRLRRIVLSRVLLAVVAIAPLAACQTRPVQVAQDDESAWYIGSKPDKPFDI
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCCCCC
PLVDTQRLDPKYRRQQVSYNGPEQPGTIVVDIDKRQLVLVQADGTAMQYGVGVGKAGFSW
CCCCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCEEEEEEECCCEEEECCCCCCCCCCC
KGEARVGRKGVWPDWSPTVTMVSLHPDLPRTRKGGLDNPLGARALYLYQGNRDILFRIHG
CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEECC
TNEPWSIGEQMSSGCVRMLNEDIADLYERVPVGTRVLIKRNGKYRT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]