| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
Click here to switch to the map view.
The map label for this gene is yciR [C]
Identifier: 170750603
GI number: 170750603
Start: 4461108
End: 4463594
Strand: Direct
Name: yciR [C]
Synonym: Mrad2831_4213
Alternate gene names: 170750603
Gene position: 4461108-4463594 (Clockwise)
Preceding gene: 170750602
Following gene: 170750604
Centisome position: 73.4
GC content: 73.62
Gene sequence:
>2487_bases ATGACCGCGGACGCGTCCGGCCCGCCCGGCGCGATCGAGCCGACCGCGCGGCGGAGATCCTGGCCGGGCCGCGCGGCATC GCTGCTCGGCCGCCTCTGCGGTCCCGACGCCGACGACGCGCTGCCGAACCGCTACCGCCTGCAGGTGCGCGCGGGGCTCC TCGACGAGACGCTGAAGCTCGCCACCTACTCGGCGGTGACGCACCTGATCATCGCGCTGGCCGTCGCGTACTTCTTCTGG GGCTCGGCCTCGCACACCTACCTCCTCGGCCTGCTCGCCGTGGTCGCGGTGCTGATCGCGGCGGCGACCTACGCGACCTG GCTCTACTGGCGCACCCACGGCGACACCGCCTCGGCCGCCACCGTCCGGTGGGGTTGCCGGATCTCCGCCGGCCTGGCCT TCGCCCTGGGCCTCGCCTGGGCGACCCTGCCGGTCGTGCTGTTCGCCCCCTCCGGCGGCGACGCGCGGCTGCTCGTCGTC GCCATCGTGACCGGCCTGATCTCGGACGCCTACGTGGTCGGCCCGCTCCTGTCGGTCTCGTACCTGTTCGCGGTCCCGGT CATCGTCGGCAGCTTCGTCGGGCTGGCCCGGTCCGGGGAGCCGGTCGCGCTCAGCCTCGGCTTCCTGCTCGCGGTCTACG CGATCTTCGTGGTGACGAGCGTGAGGCGCATGAGCCGCCTGTCGCGCCAGCGCATCCTCGACCGCGTGCGGGTCGGGGAC CAGAGCGAGACGATCGGGCTGCTGCTCAACGCCTTCGAGGCGAATGCCAGCGACTGGCTGTGGGAGACGGACGGGACCGG GCGGTTCCAGCACGTCTCCACCCGGATGGCGGACGTGCTGGCCTGCCCGGTGCGGACACTCCAGCACGCCTCGTTCCCGG CGCTGCTCGCCGGCCGGGCCGAGGCCTCGCCCAAGGGCTCCCCCGAGATCTCGCCCGAGATCTCCCCCGAGGCCGATCAG AGCGCCGACCTGCTGGACCGCCTCCGGCGGGGCGTCGCCTTCCACCAGCACCTCATCGCCGTCGACACGCCGGCCGGCCG GCGCTGGCTCCGGCTGAGCGGCAAGCCGTTCCTCGATCAGAAGGGGCGCTTCGCGGGCTTCCGGGGTGTCGGCTCCGACG TGACGGAGGCCCGACGGGCGGAAGCGCACATCGCCTACCTGGCCACCCGGGATCCGATGACCGGGCTGTCGAACCGGGTC ATGTTCCACGACGTCGCGTCCGAGGTCTGCGCGGCCGCCGCGCAGACCTCGCCACAGGCTCCGGACGCGACGGTCAGCCT GCTCTACCTCGACCTCGACGGCTTCAAGACCGTCAACGACAGCATCGGCCACGCCGCCGGCGACGCCCTGCTGGGGCAGG TCGCCGATCGCCTGCGCGCGCTGCTCCCGGCCGACGCGCAGGCGTTCCGCCTCGGCGGCGACGAGTTCGCGATCCTGCAG CGCGGCCGGGACGGCGCGGCCGCGCGGGCCCTGGCCGAGGCCACGATCGGGGTCCTGCGCGAGCCCTACCTCATCGACGG CGTCCGGGCGGAGATCGGCGTCAGCGTCGGGATCGCCTGCGCCCCCGCGGACGCGACCGAGCCCGAGGACCTGCTCCGGA AGGCGGACCTCGCGCTCTACAGCGCCAAGCAGGGCGGCAAGGGGCGCTGGCGGGGCTTCGACCGCGACCTGGAGGTGCGC GTCCAGCGCCGGCACGAACTCGACGAGGCGATGCGGCAGGCCCTCGCGGACGGCGAGATGGCGCTGCACTACCAGCCGCT GGTCGGCCTGCAGGACGGCCAGGTGGTGGGCTGCGAGGCGCTGCTGCGCTGGACCCGGCCCGGTCTCGGCCCCGTCTCGC CCGCCGAGCTGATCCCGATCGCCGAGGGAACGGGCTTCATCCTCGCGATCGGGCGCTGGGCCCTGCGGCGGGCCTGCGCG GAGGCGCTGACCTGGCCGGCGCGCCTGCGCGTCGCCGTCAACATCTCGTCGGTCCATTTCCGCCGGCCCGACTTCTTCGC CGACGTCGCGGCGGTGCTGAGCGAGACCGGCCTGGCGGCGGAGCGCCTCGAGATCGAGATCACCGAGTCGATCTTCCTGG CCAACACGCCGCACGTGCTGGACAATCTCCGCGCCCTGCGGGCGCTCGGGGTGCGGATCGCCCTCGACGATTTCGGGACG GGCTACTCCTCGCTGAGCTACCTGACGCAGTTCCCGGTCGACAAGATCAAGATCGACCGCGCCTTCGTGCGCGACCTGAG CAGCCGCCCCGAATGCCTGACGGTGATCGAGGCGATCATGGTCATCGCCCGCGACCTGCGCATCGACGTCACGGTGGAGG GCGTCGAGACCGAGCAGCAGGCCGAGCTCCTGCGGCTGCGGCGCTGCAACAGCGCGCAGGGCTTCCTGTACAGCCCGGCG CGGCCGCCCGAGGAGATCCCCGGCCTGATCGAGCGCCTGCCCCGGACGGCGCTCCCGGCGGAGCGGGCCGTCCGCGCGGT CGCCTGA
Upstream 100 bases:
>100_bases GCCGAGATGCCGGCGGCGCAGTTCCGCGTGACCCTGCGGCCCAAGGGCGGCCTGACGATGAGGGTCGCGCCCCGCCCCGG GGCCGGCCATGTCGCCTGAC
Downstream 100 bases:
>100_bases GGGCGGCAGGGCCGGGATCCGGGTTGCCACGCGGGTGCCAACGGCTCTAGCGGGGGACGACCACGCGGAACCGGGACAGA GGCGCGCCATGCCCAAGGTC
Product: diguanylate cyclase/phosphodiesterase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 828; Mature: 827
Protein sequence:
>828_residues MTADASGPPGAIEPTARRRSWPGRAASLLGRLCGPDADDALPNRYRLQVRAGLLDETLKLATYSAVTHLIIALAVAYFFW GSASHTYLLGLLAVVAVLIAAATYATWLYWRTHGDTASAATVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVV AIVTGLISDAYVVGPLLSVSYLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMSRLSRQRILDRVRVGD QSETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVRTLQHASFPALLAGRAEASPKGSPEISPEISPEADQ SADLLDRLRRGVAFHQHLIAVDTPAGRRWLRLSGKPFLDQKGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRV MFHDVASEVCAAAAQTSPQAPDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPADAQAFRLGGDEFAILQ RGRDGAAARALAEATIGVLREPYLIDGVRAEIGVSVGIACAPADATEPEDLLRKADLALYSAKQGGKGRWRGFDRDLEVR VQRRHELDEAMRQALADGEMALHYQPLVGLQDGQVVGCEALLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACA EALTWPARLRVAVNISSVHFRRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHVLDNLRALRALGVRIALDDFGT GYSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAIMVIARDLRIDVTVEGVETEQQAELLRLRRCNSAQGFLYSPA RPPEEIPGLIERLPRTALPAERAVRAVA
Sequences:
>Translated_828_residues MTADASGPPGAIEPTARRRSWPGRAASLLGRLCGPDADDALPNRYRLQVRAGLLDETLKLATYSAVTHLIIALAVAYFFW GSASHTYLLGLLAVVAVLIAAATYATWLYWRTHGDTASAATVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVV AIVTGLISDAYVVGPLLSVSYLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMSRLSRQRILDRVRVGD QSETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVRTLQHASFPALLAGRAEASPKGSPEISPEISPEADQ SADLLDRLRRGVAFHQHLIAVDTPAGRRWLRLSGKPFLDQKGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRV MFHDVASEVCAAAAQTSPQAPDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPADAQAFRLGGDEFAILQ RGRDGAAARALAEATIGVLREPYLIDGVRAEIGVSVGIACAPADATEPEDLLRKADLALYSAKQGGKGRWRGFDRDLEVR VQRRHELDEAMRQALADGEMALHYQPLVGLQDGQVVGCEALLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACA EALTWPARLRVAVNISSVHFRRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHVLDNLRALRALGVRIALDDFGT GYSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAIMVIARDLRIDVTVEGVETEQQAELLRLRRCNSAQGFLYSPA RPPEEIPGLIERLPRTALPAERAVRAVA >Mature_827_residues TADASGPPGAIEPTARRRSWPGRAASLLGRLCGPDADDALPNRYRLQVRAGLLDETLKLATYSAVTHLIIALAVAYFFWG SASHTYLLGLLAVVAVLIAAATYATWLYWRTHGDTASAATVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVVA IVTGLISDAYVVGPLLSVSYLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMSRLSRQRILDRVRVGDQ SETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVRTLQHASFPALLAGRAEASPKGSPEISPEISPEADQS ADLLDRLRRGVAFHQHLIAVDTPAGRRWLRLSGKPFLDQKGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRVM FHDVASEVCAAAAQTSPQAPDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPADAQAFRLGGDEFAILQR GRDGAAARALAEATIGVLREPYLIDGVRAEIGVSVGIACAPADATEPEDLLRKADLALYSAKQGGKGRWRGFDRDLEVRV QRRHELDEAMRQALADGEMALHYQPLVGLQDGQVVGCEALLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACAE ALTWPARLRVAVNISSVHFRRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHVLDNLRALRALGVRIALDDFGTG YSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAIMVIARDLRIDVTVEGVETEQQAELLRLRRCNSAQGFLYSPAR PPEEIPGLIERLPRTALPAERAVRAVA
Specific function: Unknown
COG id: COG5001
COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]
Homologues:
Organism=Escherichia coli, GI1787541, Length=479, Percent_Identity=35.0730688935282, Blast_Score=281, Evalue=9e-77, Organism=Escherichia coli, GI87081921, Length=440, Percent_Identity=34.3181818181818, Blast_Score=246, Evalue=5e-66, Organism=Escherichia coli, GI226510982, Length=427, Percent_Identity=29.03981264637, Blast_Score=164, Evalue=2e-41, Organism=Escherichia coli, GI1790496, Length=250, Percent_Identity=32.8, Blast_Score=142, Evalue=7e-35, Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=34.453781512605, Blast_Score=142, Evalue=1e-34, Organism=Escherichia coli, GI1787055, Length=239, Percent_Identity=35.9832635983264, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=33.8912133891213, Blast_Score=139, Evalue=9e-34, Organism=Escherichia coli, GI87081980, Length=249, Percent_Identity=32.9317269076305, Blast_Score=129, Evalue=5e-31, Organism=Escherichia coli, GI87081743, Length=252, Percent_Identity=32.5396825396825, Blast_Score=126, Evalue=7e-30, Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=32.03125, Blast_Score=119, Evalue=8e-28, Organism=Escherichia coli, GI1788381, Length=198, Percent_Identity=33.8383838383838, Blast_Score=106, Evalue=6e-24, Organism=Escherichia coli, GI1788849, Length=388, Percent_Identity=26.2886597938144, Blast_Score=105, Evalue=1e-23, Organism=Escherichia coli, GI1787262, Length=187, Percent_Identity=31.5508021390374, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI87082096, Length=243, Percent_Identity=27.1604938271605, Blast_Score=83, Evalue=7e-17, Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=34.4632768361582, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1788956, Length=212, Percent_Identity=32.0754716981132, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI87081977, Length=176, Percent_Identity=30.1136363636364, Blast_Score=79, Evalue=2e-15, Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=30.1204819277108, Blast_Score=77, Evalue=6e-15, Organism=Escherichia coli, GI1789650, Length=442, Percent_Identity=21.7194570135747, Blast_Score=77, Evalue=6e-15, Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=31.9767441860465, Blast_Score=70, Evalue=6e-13, Organism=Escherichia coli, GI1787410, Length=237, Percent_Identity=22.3628691983122, Blast_Score=63, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001054 - InterPro: IPR000160 - InterPro: IPR001633 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013656 - InterPro: IPR013655 [H]
Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]
EC number: NA
Molecular weight: Translated: 89316; Mature: 89185
Theoretical pI: Translated: 7.02; Mature: 7.02
Prosite motif: PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTADASGPPGAIEPTARRRSWPGRAASLLGRLCGPDADDALPNRYRLQVRAGLLDETLKL CCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHH ATYSAVTHLIIALAVAYFFWGSASHTYLLGLLAVVAVLIAAATYATWLYWRTHGDTASAA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCE TVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVVAIVTGLISDAYVVGPLLSVS EEEECCEEHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMSRLSRQRILDRVRVGD HHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QSETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVRTLQHASFPALLAGRA CCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC EASPKGSPEISPEISPEADQSADLLDRLRRGVAFHQHLIAVDTPAGRRWLRLSGKPFLDQ CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCC KGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRVMFHDVASEVCAAAAQTSPQA CCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC PDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPADAQAFRLGGDEFAILQ CCCEEEEEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCEEEEEE RGRDGAAARALAEATIGVLREPYLIDGVRAEIGVSVGIACAPADATEPEDLLRKADLALY CCCCCHHHHHHHHHHHHHHCCCCEECCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHE SAKQGGKGRWRGFDRDLEVRVQRRHELDEAMRQALADGEMALHYQPLVGLQDGQVVGCEA ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH LLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACAEALTWPARLRVAVNISSVHF HHHHCCCCCCCCCHHHEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCEEE RRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHVLDNLRALRALGVRIALDDFGT CCCHHHHHHHHHHHHCCCCHHHEEEEEECEEEECCCCHHHHHHHHHHHHCCEEEEECCCC GYSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAIMVIARDLRIDVTVEGVETEQQ CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCHHH AELLRLRRCNSAQGFLYSPARPPEEIPGLIERLPRTALPAERAVRAVA HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHCC >Mature Secondary Structure TADASGPPGAIEPTARRRSWPGRAASLLGRLCGPDADDALPNRYRLQVRAGLLDETLKL CCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEHHHHHHHHHH ATYSAVTHLIIALAVAYFFWGSASHTYLLGLLAVVAVLIAAATYATWLYWRTHGDTASAA HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCE TVRWGCRISAGLAFALGLAWATLPVVLFAPSGGDARLLVVAIVTGLISDAYVVGPLLSVS EEEECCEEHHHHHHHHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH YLFAVPVIVGSFVGLARSGEPVALSLGFLLAVYAIFVVTSVRRMSRLSRQRILDRVRVGD HHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QSETIGLLLNAFEANASDWLWETDGTGRFQHVSTRMADVLACPVRTLQHASFPALLAGRA CCHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCC EASPKGSPEISPEISPEADQSADLLDRLRRGVAFHQHLIAVDTPAGRRWLRLSGKPFLDQ CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEECCCCCCCC KGRFAGFRGVGSDVTEARRAEAHIAYLATRDPMTGLSNRVMFHDVASEVCAAAAQTSPQA CCCCCCCCCCCCHHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC PDATVSLLYLDLDGFKTVNDSIGHAAGDALLGQVADRLRALLPADAQAFRLGGDEFAILQ CCCEEEEEEEECCCCCHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHEECCCCEEEEEE RGRDGAAARALAEATIGVLREPYLIDGVRAEIGVSVGIACAPADATEPEDLLRKADLALY CCCCCHHHHHHHHHHHHHHCCCCEECCCHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHE SAKQGGKGRWRGFDRDLEVRVQRRHELDEAMRQALADGEMALHYQPLVGLQDGQVVGCEA ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHH LLRWTRPGLGPVSPAELIPIAEGTGFILAIGRWALRRACAEALTWPARLRVAVNISSVHF HHHHCCCCCCCCCHHHEEEECCCCCEEEEHHHHHHHHHHHHHHCCCCCEEEEEEECCEEE RRPDFFADVAAVLSETGLAAERLEIEITESIFLANTPHVLDNLRALRALGVRIALDDFGT CCCHHHHHHHHHHHHCCCCHHHEEEEEECEEEECCCCHHHHHHHHHHHHCCEEEEECCCC GYSSLSYLTQFPVDKIKIDRAFVRDLSSRPECLTVIEAIMVIARDLRIDVTVEGVETEQQ CHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEEEEECCCCHHH AELLRLRRCNSAQGFLYSPARPPEEIPGLIERLPRTALPAERAVRAVA HHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]