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The map label for this gene is ybaK [H]

Identifier: 170750476

GI number: 170750476

Start: 4335971

End: 4336468

Strand: Direct

Name: ybaK [H]

Synonym: Mrad2831_4083

Alternate gene names: 170750476

Gene position: 4335971-4336468 (Clockwise)

Preceding gene: 170750475

Following gene: 170750477

Centisome position: 71.34

GC content: 71.89

Gene sequence:

>498_bases
ATGAAGACGCCCGCCAGGACATCTGCCAAGACGACCCGCGCCACGCTCGCCCTCGACAAGGCCGGCATCCGCCACGGCCT
CCACGTCTACGCGTACGATCCGGACGCCCCGCGCATCGGCCTGCAGGCCGCGGAGGCGCTCGGTGTGGACCCGGGACGCG
TGCTGAAGACCCTGATGGCGTCGGTGGACGGACGGACGGTCTGCCTGCTCGTGGCCTCCGACAAGGAGGTGTCGATGAAG
CGGGTCGCCGCCGCCTTCTCGGGCAAGGCCGCGTCCATGCTCAAGCCGGCCGACGCCGAGCGGCTGACCGGCTACCATGT
CGGCGGGATCAGCCCCCTGGGTCAGAAGCGCCCCTTCCCGACGGCGATCGACGCCGGATCCCTGACCGACCCGGCGGCCG
AGATCCACGTCAACGGCGGCGGCCGGGGCTTGCAGATCCGGCTGACCGAGGGCGACCTCGTCGGCGTCCTGAACGCCCTC
GTCGTGCCGCTCGCGTGA

Upstream 100 bases:

>100_bases
TCACGGGATCGACGGCCTCCCCCGACACCTGCGCGGCGGCCTACGCGGAGATCGCCCGCCTCATCGCCGCGCGCGCCCAG
TCCACCTGACCGAACGAGCC

Downstream 100 bases:

>100_bases
TCCCGCGGTAAGCGTCCGTTTACCCTGCCGTCGCACGGTGCCGCCTTCCGGCTGGGATGGAGGCGGCATGCGGGCGACGA
CGCGCAGGGCGGTGACGGCG

Product: YbaK/prolyl-tRNA synthetase associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MKTPARTSAKTTRATLALDKAGIRHGLHVYAYDPDAPRIGLQAAEALGVDPGRVLKTLMASVDGRTVCLLVASDKEVSMK
RVAAAFSGKAASMLKPADAERLTGYHVGGISPLGQKRPFPTAIDAGSLTDPAAEIHVNGGGRGLQIRLTEGDLVGVLNAL
VVPLA

Sequences:

>Translated_165_residues
MKTPARTSAKTTRATLALDKAGIRHGLHVYAYDPDAPRIGLQAAEALGVDPGRVLKTLMASVDGRTVCLLVASDKEVSMK
RVAAAFSGKAASMLKPADAERLTGYHVGGISPLGQKRPFPTAIDAGSLTDPAAEIHVNGGGRGLQIRLTEGDLVGVLNAL
VVPLA
>Mature_165_residues
MKTPARTSAKTTRATLALDKAGIRHGLHVYAYDPDAPRIGLQAAEALGVDPGRVLKTLMASVDGRTVCLLVASDKEVSMK
RVAAAFSGKAASMLKPADAERLTGYHVGGISPLGQKRPFPTAIDAGSLTDPAAEIHVNGGGRGLQIRLTEGDLVGVLNAL
VVPLA

Specific function: Functions in trans to edit the amino acid from incorrectly charged Cys-tRNA(Pro). May compensate for the lack of Cys-tRNA(Pro) editing by ProRS. Additionally serves as a general deacylase with weak activity against Cys-tRNA(Cys) and Gly- tRNA(Gly), as wel

COG id: COG2606

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the prolyl-tRNA editing family. ProX subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786688, Length=160, Percent_Identity=41.875, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004369
- InterPro:   IPR007214 [H]

Pfam domain/function: PF04073 YbaK [H]

EC number: NA

Molecular weight: Translated: 17060; Mature: 17060

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTPARTSAKTTRATLALDKAGIRHGLHVYAYDPDAPRIGLQAAEALGVDPGRVLKTLMA
CCCCCCCCCCHHHHHEEEHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHH
SVDGRTVCLLVASDKEVSMKRVAAAFSGKAASMLKPADAERLTGYHVGGISPLGQKRPFP
HCCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHCCCCCCHHCCEEECCCCCCCCCCCCCC
TAIDAGSLTDPAAEIHVNGGGRGLQIRLTEGDLVGVLNALVVPLA
CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKTPARTSAKTTRATLALDKAGIRHGLHVYAYDPDAPRIGLQAAEALGVDPGRVLKTLMA
CCCCCCCCCCHHHHHEEEHHHHHHCCCEEEEECCCCCCCCHHHHHHHCCCHHHHHHHHHH
SVDGRTVCLLVASDKEVSMKRVAAAFSGKAASMLKPADAERLTGYHVGGISPLGQKRPFP
HCCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHCCCCCCHHCCEEECCCCCCCCCCCCCC
TAIDAGSLTDPAAEIHVNGGGRGLQIRLTEGDLVGVLNALVVPLA
CCCCCCCCCCCCEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 3012467; 10493123 [H]