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The map label for this gene is deoC [H]

Identifier: 170750321

GI number: 170750321

Start: 4174989

End: 4175720

Strand: Reverse

Name: deoC [H]

Synonym: Mrad2831_3924

Alternate gene names: 170750321

Gene position: 4175720-4174989 (Counterclockwise)

Preceding gene: 170750322

Following gene: 170750320

Centisome position: 68.7

GC content: 74.86

Gene sequence:

>732_bases
ATGACTGATCCCGATGCCGGCGCGGTCGCCCGCCGGGCCCTGCCGCTCCTCGACCTCACCGATCTCGGCGAGACCTGCAC
CGAGACCAAGATCGACGTCCTCTGCCGGGACGCGAAGCGCGGCGGCGTCGCGGCGATCTGCGTCTGGCCGCGCTTCGTCG
CGCAGGGCGCGCGGGCGCTCGCGGGCACCGGGATCCGGATCGCCACGGTGATCAACTTCCCCGCGGGCGGCGAGGACTGC
GCCCGCGCCACCGACGACACCGCCGAGGCCCTGCGCGACGGCGCCGACGAGATCGACCTCGTCCTGCCCTACGGCGCGCT
GCTGCGGGGCGAGGCGGCGATCGCCCGCGACATGGTCGAGGCCGTGCGCGACACCTGCGGGTCCGCGACCCTCAAGGTGA
TCCTGGAGACGGGCGAACTCGCCGATCCGGGGCGGATCCGGGAGGCCGGCCGGATCGCCCTGGAGGCGGGCGCCGATTTC
CTGAAAACCTCCACGGGCAAGAGCCCGGTCTCGGCGACCCCGGAGGCCGCCGAGGCGATGCTGGCCGAGATCCGCGGCGG
CGGCCGCCCCGCGGGCCTGAAGGTCTCCGGCGGCCTGCGCAGCGTCGCCGACGCCGCCACCTACCTCGATCTGGCCGACC
GGCTCATGGGGCCCGGCTGGGTGAGCCCCGCAACCTTCCGGCTCGGAGCGAGCAGCCTGTTCGGGACCCTGATCCAGGCG
CGGGAGCTGTGA

Upstream 100 bases:

>100_bases
AACCACGCGGAGACGAAGGCGGTGGCGGCCCGGGCCGCGGAGGATCTCGGCCGCCTGGTCCGGGCCTTCGTGGCCGGCCT
GCCCGACGGAGAGACAGCCG

Downstream 100 bases:

>100_bases
GCGTGCCGCTTCCCCAGGAGAGGCTTCCCCAGGAGAGGCTGCCCCAGGAGACGATCCGGGCCAAGCGCGACGGCCAGCCC
CTCGAGCCGGAGGCGATCGA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MTDPDAGAVARRALPLLDLTDLGETCTETKIDVLCRDAKRGGVAAICVWPRFVAQGARALAGTGIRIATVINFPAGGEDC
ARATDDTAEALRDGADEIDLVLPYGALLRGEAAIARDMVEAVRDTCGSATLKVILETGELADPGRIREAGRIALEAGADF
LKTSTGKSPVSATPEAAEAMLAEIRGGGRPAGLKVSGGLRSVADAATYLDLADRLMGPGWVSPATFRLGASSLFGTLIQA
REL

Sequences:

>Translated_243_residues
MTDPDAGAVARRALPLLDLTDLGETCTETKIDVLCRDAKRGGVAAICVWPRFVAQGARALAGTGIRIATVINFPAGGEDC
ARATDDTAEALRDGADEIDLVLPYGALLRGEAAIARDMVEAVRDTCGSATLKVILETGELADPGRIREAGRIALEAGADF
LKTSTGKSPVSATPEAAEAMLAEIRGGGRPAGLKVSGGLRSVADAATYLDLADRLMGPGWVSPATFRLGASSLFGTLIQA
REL
>Mature_242_residues
TDPDAGAVARRALPLLDLTDLGETCTETKIDVLCRDAKRGGVAAICVWPRFVAQGARALAGTGIRIATVINFPAGGEDCA
RATDDTAEALRDGADEIDLVLPYGALLRGEAAIARDMVEAVRDTCGSATLKVILETGELADPGRIREAGRIALEAGADFL
KTSTGKSPVSATPEAAEAMLAEIRGGGRPAGLKVSGGLRSVADAATYLDLADRLMGPGWVSPATFRLGASSLFGTLIQAR
EL

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 2 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=247, Percent_Identity=37.246963562753, Blast_Score=135, Evalue=4e-32,
Organism=Escherichia coli, GI1790841, Length=238, Percent_Identity=45.3781512605042, Blast_Score=181, Evalue=6e-47,
Organism=Caenorhabditis elegans, GI17533015, Length=238, Percent_Identity=33.6134453781513, Blast_Score=124, Evalue=4e-29,
Organism=Drosophila melanogaster, GI19922098, Length=255, Percent_Identity=32.9411764705882, Blast_Score=100, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 25092; Mature: 24961

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPDAGAVARRALPLLDLTDLGETCTETKIDVLCRDAKRGGVAAICVWPRFVAQGARAL
CCCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHH
AGTGIRIATVINFPAGGEDCARATDDTAEALRDGADEIDLVLPYGALLRGEAAIARDMVE
HCCCEEEEEEEECCCCCHHHHHCCCHHHHHHHCCCCCEEEEECCHHHHHCHHHHHHHHHH
AVRDTCGSATLKVILETGELADPGRIREAGRIALEAGADFLKTSTGKSPVSATPEAAEAM
HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHH
LAEIRGGGRPAGLKVSGGLRSVADAATYLDLADRLMGPGWVSPATFRLGASSLFGTLIQA
HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
REL
HCC
>Mature Secondary Structure 
TDPDAGAVARRALPLLDLTDLGETCTETKIDVLCRDAKRGGVAAICVWPRFVAQGARAL
CCCCHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHH
AGTGIRIATVINFPAGGEDCARATDDTAEALRDGADEIDLVLPYGALLRGEAAIARDMVE
HCCCEEEEEEEECCCCCHHHHHCCCHHHHHHHCCCCCEEEEECCHHHHHCHHHHHHHHHH
AVRDTCGSATLKVILETGELADPGRIREAGRIALEAGADFLKTSTGKSPVSATPEAAEAM
HHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCHHHHHHH
LAEIRGGGRPAGLKVSGGLRSVADAATYLDLADRLMGPGWVSPATFRLGASSLFGTLIQA
HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
REL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA