| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
Click here to switch to the map view.
The map label for this gene is mdoD [H]
Identifier: 170750300
GI number: 170750300
Start: 4151220
End: 4152734
Strand: Direct
Name: mdoD [H]
Synonym: Mrad2831_3903
Alternate gene names: 170750300
Gene position: 4151220-4152734 (Clockwise)
Preceding gene: 170750297
Following gene: 170750304
Centisome position: 68.3
GC content: 76.24
Gene sequence:
>1515_bases ATGACCTTCGAGACGCTCTCGGCCGAGGCGGCGCGCCGCGCCGCCGCGCCCTACGCCGCACCGCCCGAGGATCTGCCGCC GGCGCTCGCTGCCCTCGATTACGACGGCTACCGGGCGATCACCTTCCGGCCGGCTGCGAGCCTGCGGCTCGGCGCGCATT TCAGCGCGCAGCTGTTCCACCGCGGCTTCCTGCAGCGCAGGCGCGTGGCGCTCCACCTCCAGCCGCTCCGGGGGCCCGCG CGCCCGATCCCCTACGACACGCAGCTGTTCGACCTGGGCACGCGGCTCGCCGGCCAGAGCTTCCCGGCGGATCTCGGCTT CGCGGGCTTCCGCCTGCACTACGCCTTCCCGGGCACCCCGGCCTGGCGGCCGAAGGGCTTCCAGGAGGAGTTCCTCGTCT TCCTGGGCGCTTCCTACTTCCGCCTGCGCGCGGCCAACCAGGAATACGGGCTCTCGGCCCGGGGCCTCGCCATCGGCACC GGCGCGCCGGAGGGCGAGGAATTTCCCGACTTCGTCGCGCACTGGATCTGCGAGCCGGAGCCGGAGGCGCGCACGCTCAC GGTGCTCTCGCTCCTCGACAGCCCGAGCGTGGCCGGCGCCTACCGGTTCGAGATCGCGCCCGGCGATCCGGCCCGGATCG CCGTCACCGCGGCGCTCCACCCGCGCCGGGCGCTCCCGAAGCTCGGGCTGGCGCCGCTCACCAGCATGTTCCTCTTCGGC CAGAACGGGCCCGGGGCGCGGGGCGCGAAGCCCTTCGACGATTTCCGGCCGCAGGTGCACGATTCCGACGGCCTCTGCGT CGCGGCCGGGGCCGACCCGGCGCGGCTCGACCGGATCTGGCGGCCCCTGGTCAACGGGCGCGCGCAGCCGCAGATCTCCG CCTTCGCGGCCCGGCCGCTCGCCGGCTTCGGGCTGCTGCAGCGGGAGCGGAGCTTCGCGGCCTACCTCGACGTGGAGGCG CGCCACGAGGCGCGGCCGGGCCTGTGGGTGGCGCCGGATCCCGCCGGGGGCGCCTTCGCGGACGGCGCCGTGCAGCTGTT CGAGATCCCGTCGGGCGAGGAGTACATGGACAACATCGTGGCGGCCTTCGTGCCGGCCGCCCCGGCGCGGCCCGGCGCGC CGCTGCACGTCGCCTACGGCCTGACCACGGTGGGGGCGGAGCCGGTGGCGGCGATCCCGGAGGCCGCCCTCGCCCGGGTG ACGTCGACGCGGCTCGGCTCGGCGGAGCGCCTGCGCCCGTCGAACCCGCCCGACCCGCGGCGGCGGCTCTGCGTCATCGA CTTCGAGGGTCCGGGCCTGCCGCGGGGTCCCGACGACGCGGTCGCCGCGGAGGTCTCGGCCAGCGCCGGGACGATGCACG AGCCGGTCGCCAACTTCGTGCCGCAGACCGGCGGCTGGCGGATCTACGTCGAGTGGCGCCCGCCGGAGCCGGTGCCGCCG GGCGACGTCGTGCTGCGCGCCCGGCTGGTCCGCGGGACCGTCCCCCTCAGCGAGACCTGGGACGCGGCCGTCTAG
Upstream 100 bases:
>100_bases AGTCGTGGCCGCGGCTGCCGGCACGGTTCTACCTAGCGCGACTGATCTGAATGGGTCCAGAACGTGGGCCGGGCCGGCGC TTCAGCCGCAGGGCGACGCG
Downstream 100 bases:
>100_bases GTACCGGGATCGCGCCGCGGCGGCGCCGGACGGTTCGGGCCCGTTCAGGCGGTCCGGCGCTCCCGCTCCAGGCGCCGGGC CAGGCGGGTGGCGCCGTAGA
Product: glucan biosynthesis protein D
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 504; Mature: 503
Protein sequence:
>504_residues MTFETLSAEAARRAAAPYAAPPEDLPPALAALDYDGYRAITFRPAASLRLGAHFSAQLFHRGFLQRRRVALHLQPLRGPA RPIPYDTQLFDLGTRLAGQSFPADLGFAGFRLHYAFPGTPAWRPKGFQEEFLVFLGASYFRLRAANQEYGLSARGLAIGT GAPEGEEFPDFVAHWICEPEPEARTLTVLSLLDSPSVAGAYRFEIAPGDPARIAVTAALHPRRALPKLGLAPLTSMFLFG QNGPGARGAKPFDDFRPQVHDSDGLCVAAGADPARLDRIWRPLVNGRAQPQISAFAARPLAGFGLLQRERSFAAYLDVEA RHEARPGLWVAPDPAGGAFADGAVQLFEIPSGEEYMDNIVAAFVPAAPARPGAPLHVAYGLTTVGAEPVAAIPEAALARV TSTRLGSAERLRPSNPPDPRRRLCVIDFEGPGLPRGPDDAVAAEVSASAGTMHEPVANFVPQTGGWRIYVEWRPPEPVPP GDVVLRARLVRGTVPLSETWDAAV
Sequences:
>Translated_504_residues MTFETLSAEAARRAAAPYAAPPEDLPPALAALDYDGYRAITFRPAASLRLGAHFSAQLFHRGFLQRRRVALHLQPLRGPA RPIPYDTQLFDLGTRLAGQSFPADLGFAGFRLHYAFPGTPAWRPKGFQEEFLVFLGASYFRLRAANQEYGLSARGLAIGT GAPEGEEFPDFVAHWICEPEPEARTLTVLSLLDSPSVAGAYRFEIAPGDPARIAVTAALHPRRALPKLGLAPLTSMFLFG QNGPGARGAKPFDDFRPQVHDSDGLCVAAGADPARLDRIWRPLVNGRAQPQISAFAARPLAGFGLLQRERSFAAYLDVEA RHEARPGLWVAPDPAGGAFADGAVQLFEIPSGEEYMDNIVAAFVPAAPARPGAPLHVAYGLTTVGAEPVAAIPEAALARV TSTRLGSAERLRPSNPPDPRRRLCVIDFEGPGLPRGPDDAVAAEVSASAGTMHEPVANFVPQTGGWRIYVEWRPPEPVPP GDVVLRARLVRGTVPLSETWDAAV >Mature_503_residues TFETLSAEAARRAAAPYAAPPEDLPPALAALDYDGYRAITFRPAASLRLGAHFSAQLFHRGFLQRRRVALHLQPLRGPAR PIPYDTQLFDLGTRLAGQSFPADLGFAGFRLHYAFPGTPAWRPKGFQEEFLVFLGASYFRLRAANQEYGLSARGLAIGTG APEGEEFPDFVAHWICEPEPEARTLTVLSLLDSPSVAGAYRFEIAPGDPARIAVTAALHPRRALPKLGLAPLTSMFLFGQ NGPGARGAKPFDDFRPQVHDSDGLCVAAGADPARLDRIWRPLVNGRAQPQISAFAARPLAGFGLLQRERSFAAYLDVEAR HEARPGLWVAPDPAGGAFADGAVQLFEIPSGEEYMDNIVAAFVPAAPARPGAPLHVAYGLTTVGAEPVAAIPEAALARVT STRLGSAERLRPSNPPDPRRRLCVIDFEGPGLPRGPDDAVAAEVSASAGTMHEPVANFVPQTGGWRIYVEWRPPEPVPPG DVVLRARLVRGTVPLSETWDAAV
Specific function: Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs) [H]
COG id: COG3131
COG function: function code P; Periplasmic glucans biosynthesis protein
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the opgD/opgG family [H]
Homologues:
Organism=Escherichia coli, GI1787286, Length=504, Percent_Identity=34.7222222222222, Blast_Score=279, Evalue=3e-76, Organism=Escherichia coli, GI145693128, Length=514, Percent_Identity=34.4357976653696, Blast_Score=227, Evalue=1e-60,
Paralogues:
None
Copy number: 280 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014438 - InterPro: IPR007444 - InterPro: IPR011013 - InterPro: IPR014756 [H]
Pfam domain/function: PF04349 MdoG [H]
EC number: NA
Molecular weight: Translated: 54121; Mature: 53990
Theoretical pI: Translated: 6.86; Mature: 6.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFETLSAEAARRAAAPYAAPPEDLPPALAALDYDGYRAITFRPAASLRLGAHFSAQLFH CCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCEEECCCHHHHHHH RGFLQRRRVALHLQPLRGPARPIPYDTQLFDLGTRLAGQSFPADLGFAGFRLHYAFPGTP HHHHHHCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC AWRPKGFQEEFLVFLGASYFRLRAANQEYGLSARGLAIGTGAPEGEEFPDFVAHWICEPE CCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCC PEARTLTVLSLLDSPSVAGAYRFEIAPGDPARIAVTAALHPRRALPKLGLAPLTSMFLFG CCCCEEEEEEHHCCCCCCCEEEEEECCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHEEC QNGPGARGAKPFDDFRPQVHDSDGLCVAAGADPARLDRIWRPLVNGRAQPQISAFAARPL CCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCH AGFGLLQRERSFAAYLDVEARHEARPGLWVAPDPAGGAFADGAVQLFEIPSGEEYMDNIV HHHHHHHHHCCEEEEEEEEHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCCHHHHHHHH AAFVPAAPARPGAPLHVAYGLTTVGAEPVAAIPEAALARVTSTRLGSAERLRPSNPPDPR HHHCCCCCCCCCCCEEEEECEEECCCCCHHHCCHHHHHHHHHHHCCCHHHCCCCCCCCHH RRLCVIDFEGPGLPRGPDDAVAAEVSASAGTMHEPVANFVPQTGGWRIYVEWRPPEPVPP HEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCC GDVVLRARLVRGTVPLSETWDAAV CHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure TFETLSAEAARRAAAPYAAPPEDLPPALAALDYDGYRAITFRPAASLRLGAHFSAQLFH CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCEEECCCHHHHHHH RGFLQRRRVALHLQPLRGPARPIPYDTQLFDLGTRLAGQSFPADLGFAGFRLHYAFPGTP HHHHHHCEEEEEEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC AWRPKGFQEEFLVFLGASYFRLRAANQEYGLSARGLAIGTGAPEGEEFPDFVAHWICEPE CCCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCCCCC PEARTLTVLSLLDSPSVAGAYRFEIAPGDPARIAVTAALHPRRALPKLGLAPLTSMFLFG CCCCEEEEEEHHCCCCCCCEEEEEECCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHEEC QNGPGARGAKPFDDFRPQVHDSDGLCVAAGADPARLDRIWRPLVNGRAQPQISAFAARPL CCCCCCCCCCCHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCH AGFGLLQRERSFAAYLDVEARHEARPGLWVAPDPAGGAFADGAVQLFEIPSGEEYMDNIV HHHHHHHHHCCEEEEEEEEHHHCCCCCCEECCCCCCCCCCCCCEEEEECCCCHHHHHHHH AAFVPAAPARPGAPLHVAYGLTTVGAEPVAAIPEAALARVTSTRLGSAERLRPSNPPDPR HHHCCCCCCCCCCCEEEEECEEECCCCCHHHCCHHHHHHHHHHHCCCHHHCCCCCCCCHH RRLCVIDFEGPGLPRGPDDAVAAEVSASAGTMHEPVANFVPQTGGWRIYVEWRPPEPVPP HEEEEEEECCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCC GDVVLRARLVRGTVPLSETWDAAV CHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA