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The map label for this gene is phnF [C]

Identifier: 170750256

GI number: 170750256

Start: 4107173

End: 4107916

Strand: Direct

Name: phnF [C]

Synonym: Mrad2831_3858

Alternate gene names: 170750256

Gene position: 4107173-4107916 (Clockwise)

Preceding gene: 170750246

Following gene: 170750263

Centisome position: 67.58

GC content: 77.28

Gene sequence:

>744_bases
ATGGATGCGCAGGAGCAGGCGGCCGGCCTCGTCCGGGGCGAGGGGCTGACGGCGTGGCGGCAGATCGCCGACGCGCTGAC
GGCCGAGATCGCGGCGGGGCGCTACGCGCCGGGGCAGCAACTGCCCGCCGAGGCCGCCCTGGCGGCGCGGTTCGCGGTGA
ACCGGCACACGGTGCGGCGCGCCCTCGCGGCGCTCGCGGAGGGCGGCCTCGTGCGCGCCAGCCAGGGTCGGGGCACCTTC
GTGGAGGAGGCGCCCCTCGCCTACCCGATCGGGCCGCGGACACGCTTCTCCGAGATCGTCGCCGGGGCCGGGCGCGAGGC
CTGGGGCGACCTCGTCGCCTCGGCCACGGTCCCGGCCGGGCCCGAGCAGGCGGCCTCCCTGGCCCTCGCCCCCGGCGCGC
CGATCCTGGAGCTGCTGACCGTCCACCGGGCGGACAGCGCCCCGCTCTCGACGGCGCTGACCTGGCTGCCGCTGCCGCGC
TTCGCGGGCTTCGCCGAGGCCTACGCCGAGCGGGGCTCGATCACCCGGGCTTTCGCGACCTGCGGCGTCCACGACTACAC
CCGGCTCTCGACGCGGATCCGGGCCCGTCCCGCGGATTCCGCGGAGGCGCAGCGCCTCGACATCGCGCCGGGGCGGGTCG
TGCTGGTGGTGTCGAGCGTCAACATCGATCCCGCCGGCGTGCCGATCCAGGCGAACCGCACCCTGTTCGCGGCCGACCGG
GTGGAGCTGGTGATCGGGGGGTGA

Upstream 100 bases:

>100_bases
CTGTCTCGGGGTCGTCGTCATCGCGAATCCCTTCGTCGATCGGTTGTATAGGTGTATAGACAACTGGCGTGCGCCGCACA
AATGAAGTTTGGATGACAGC

Downstream 100 bases:

>100_bases
TGCGGTGTCCGCGCGACGGCCTCGGCACAGCGTCCTCGCGAGCGGAGCGAAGCGATGACGACGAGGGTCCGTCACCCGAG
CGCGCGAACCGGACGCCGTA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDAQEQAAGLVRGEGLTAWRQIADALTAEIAAGRYAPGQQLPAEAALAARFAVNRHTVRRALAALAEGGLVRASQGRGTF
VEEAPLAYPIGPRTRFSEIVAGAGREAWGDLVASATVPAGPEQAASLALAPGAPILELLTVHRADSAPLSTALTWLPLPR
FAGFAEAYAERGSITRAFATCGVHDYTRLSTRIRARPADSAEAQRLDIAPGRVVLVVSSVNIDPAGVPIQANRTLFAADR
VELVIGG

Sequences:

>Translated_247_residues
MDAQEQAAGLVRGEGLTAWRQIADALTAEIAAGRYAPGQQLPAEAALAARFAVNRHTVRRALAALAEGGLVRASQGRGTF
VEEAPLAYPIGPRTRFSEIVAGAGREAWGDLVASATVPAGPEQAASLALAPGAPILELLTVHRADSAPLSTALTWLPLPR
FAGFAEAYAERGSITRAFATCGVHDYTRLSTRIRARPADSAEAQRLDIAPGRVVLVVSSVNIDPAGVPIQANRTLFAADR
VELVIGG
>Mature_247_residues
MDAQEQAAGLVRGEGLTAWRQIADALTAEIAAGRYAPGQQLPAEAALAARFAVNRHTVRRALAALAEGGLVRASQGRGTF
VEEAPLAYPIGPRTRFSEIVAGAGREAWGDLVASATVPAGPEQAASLALAPGAPILELLTVHRADSAPLSTALTWLPLPR
FAGFAEAYAERGSITRAFATCGVHDYTRLSTRIRARPADSAEAQRLDIAPGRVVLVVSSVNIDPAGVPIQANRTLFAADR
VELVIGG

Specific function: Belongs To An Operon Involved In Alkylphosphonate Uptake And C-P Lyase. Exact Function Not Known. By Similarity Could Be A Transcriptional Regulator. [C]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790540, Length=246, Percent_Identity=32.520325203252, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87082252, Length=226, Percent_Identity=26.5486725663717, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786950, Length=143, Percent_Identity=32.8671328671329, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1790118, Length=211, Percent_Identity=22.7488151658768, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012702
- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 25745; Mature: 25745

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAQEQAAGLVRGEGLTAWRQIADALTAEIAAGRYAPGQQLPAEAALAARFAVNRHTVRR
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ALAALAEGGLVRASQGRGTFVEEAPLAYPIGPRTRFSEIVAGAGREAWGDLVASATVPAG
HHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCC
PEQAASLALAPGAPILELLTVHRADSAPLSTALTWLPLPRFAGFAEAYAERGSITRAFAT
HHHHHEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
CGVHDYTRLSTRIRARPADSAEAQRLDIAPGRVVLVVSSVNIDPAGVPIQANRTLFAADR
CCCCHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCEEECCCEEEEECC
VELVIGG
EEEEECC
>Mature Secondary Structure
MDAQEQAAGLVRGEGLTAWRQIADALTAEIAAGRYAPGQQLPAEAALAARFAVNRHTVRR
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
ALAALAEGGLVRASQGRGTFVEEAPLAYPIGPRTRFSEIVAGAGREAWGDLVASATVPAG
HHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCC
PEQAASLALAPGAPILELLTVHRADSAPLSTALTWLPLPRFAGFAEAYAERGSITRAFAT
HHHHHEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHH
CGVHDYTRLSTRIRARPADSAEAQRLDIAPGRVVLVVSSVNIDPAGVPIQANRTLFAADR
CCCCHHHHHHHHHHCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCEEECCCEEEEECC
VELVIGG
EEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481431; 9889346 [H]