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The map label for this gene is ygcA [C]

Identifier: 170750219

GI number: 170750219

Start: 4064778

End: 4066055

Strand: Direct

Name: ygcA [C]

Synonym: Mrad2831_3821

Alternate gene names: 170750219

Gene position: 4064778-4066055 (Clockwise)

Preceding gene: 170750218

Following gene: 170750220

Centisome position: 66.88

GC content: 77.86

Gene sequence:

>1278_bases
GTGAGCGAGCCAGCGAATAGCGAGACGGTCACGATCCGGGCGCTCGGCGCCCGCGGCGACGGGATCGCCGAGGACGGGAC
TCTGGTACCCTACACGCTGCCCGGGGAGCGCGCGGAGATCCGCCGGGAGGCGCGGCGCGGCGTCCTGCTCGGCGTCGCGC
AGGCCTCGCCCGACCGGGTCGAGCCGTTCTGCCCGTACTACATGCGCTGCGGCGGCTGCCGCACTCAGCACCTCGCGCGG
CCCGCGGAACTCGCCTGGAAGCGCGACCTCGTCGCCCAGGCCCTGTCCCAGGCGCGCCTCGACGTCACGCCAGGCCCGAC
CCTCGACGCCCACGGGGCGGGACGCCGCCGCCTCACCCTGCACGTGCGGGAGATCGGCGGCCGGGCCGAGGCCGGGCTGA
TGGCGGCGCGCAGCCACGCGCTGGTGCCGATCGACCATTGCCCGATCACCGTGCCGGCGCTGCACCCGGCCCCCGAGGTC
GCGCGCCGCCTCGCCGCCCCGCTGGGCCACGGGCGCAAGCCCCTCGACGTGGCCGTGACGGCCACCGACCAGGGCCTGGA
CGTCGACCTGCGCGGCCACGGACCGGTGAGCGCCGGCGTCGGCGCCGCGCTGGTGCGGATCGCCGGCGAGCTCGGCCTCG
CCCGGCTGTCGCTGCACGGCGAGCGCCTGATGGAGGCCGAGCCGGTCTCGGTCACGGCGGGCGATCCCGCCGGCGGCACC
TCCGGCGCCGCGCGCCTCTACCCGGCCCCCGGCGGCTTCCTGCAGGCGACCGCGGCCGGGCAGGCGACGCTCTGCGACCT
GACCCTGGCGGCCCTGGGACCCCGCGTCCGGCGCGTCGCCGACCTGTTCGCGGGCTGCGGGCCGCTGACCCTGGCGATCG
CCCGGACGGCCGCGGTCCACGCGGTCGAGTCCGACGCCGCCGCCCTCGCGGGCCTCGACCGCGCCGCGCGCGCCGCATCG
GGCCTGCGCAGGATCACCAGCGAGCGCCGCGACCTGTTCCGGCGGCCCCTGCTCCCCACCGAACTCGATCCCTTCGACGC
GGTGGTGTTCGACCCGCCCCGGGCCGGCGCGGAGGCCCAGGCCCGCCAGATCGCCGCGGCGCGCGTTCCCCTCGTGATCG
GCGTCGCCTGCGATGCCGGAACCTTCGCGCGGGACGCGGCGACCCTGGTCGCCGGCGGGTACCGGCTGGAGACCGTGACG
CCGGTCGATCAGTTCCGCCATTCGGGCCATGTCGAGATGGTCGGGGTGTTCCGGCGCGAGCCGGCACGGCGGCGCTAA

Upstream 100 bases:

>100_bases
AAACCCTGGAGGGGCTCGGGGCCACGATCCTGGGCCTGATCGACTCGCCGGTGCCGGGCGGCGACGGCAATGCCGAGTTC
CTGATCGGTGCGAGGTTCCC

Downstream 100 bases:

>100_bases
GCCAAGCAACCTGCGGTCAAGTTTCACGTTTCCCCGGCGACCGGAGAGCTATCATGATCCGCGGAATCCTTCCCCCCGCA
ACGCTCGGCGCACTGAGCCT

Product: (uracil-5)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MSEPANSETVTIRALGARGDGIAEDGTLVPYTLPGERAEIRREARRGVLLGVAQASPDRVEPFCPYYMRCGGCRTQHLAR
PAELAWKRDLVAQALSQARLDVTPGPTLDAHGAGRRRLTLHVREIGGRAEAGLMAARSHALVPIDHCPITVPALHPAPEV
ARRLAAPLGHGRKPLDVAVTATDQGLDVDLRGHGPVSAGVGAALVRIAGELGLARLSLHGERLMEAEPVSVTAGDPAGGT
SGAARLYPAPGGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAAVHAVESDAAALAGLDRAARAAS
GLRRITSERRDLFRRPLLPTELDPFDAVVFDPPRAGAEAQARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVT
PVDQFRHSGHVEMVGVFRREPARRR

Sequences:

>Translated_425_residues
MSEPANSETVTIRALGARGDGIAEDGTLVPYTLPGERAEIRREARRGVLLGVAQASPDRVEPFCPYYMRCGGCRTQHLAR
PAELAWKRDLVAQALSQARLDVTPGPTLDAHGAGRRRLTLHVREIGGRAEAGLMAARSHALVPIDHCPITVPALHPAPEV
ARRLAAPLGHGRKPLDVAVTATDQGLDVDLRGHGPVSAGVGAALVRIAGELGLARLSLHGERLMEAEPVSVTAGDPAGGT
SGAARLYPAPGGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAAVHAVESDAAALAGLDRAARAAS
GLRRITSERRDLFRRPLLPTELDPFDAVVFDPPRAGAEAQARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVT
PVDQFRHSGHVEMVGVFRREPARRR
>Mature_424_residues
SEPANSETVTIRALGARGDGIAEDGTLVPYTLPGERAEIRREARRGVLLGVAQASPDRVEPFCPYYMRCGGCRTQHLARP
AELAWKRDLVAQALSQARLDVTPGPTLDAHGAGRRRLTLHVREIGGRAEAGLMAARSHALVPIDHCPITVPALHPAPEVA
RRLAAPLGHGRKPLDVAVTATDQGLDVDLRGHGPVSAGVGAALVRIAGELGLARLSLHGERLMEAEPVSVTAGDPAGGTS
GAARLYPAPGGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAAVHAVESDAAALAGLDRAARAASG
LRRITSERRDLFRRPLLPTELDPFDAVVFDPPRAGAEAQARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVTP
VDQFRHSGHVEMVGVFRREPARRR

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RNA M5U methyltransferase family [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=426, Percent_Identity=28.6384976525822, Blast_Score=127, Evalue=2e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 44549; Mature: 44417

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEPANSETVTIRALGARGDGIAEDGTLVPYTLPGERAEIRREARRGVLLGVAQASPDRV
CCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCC
EPFCPYYMRCGGCRTQHLARPAELAWKRDLVAQALSQARLDVTPGPTLDAHGAGRRRLTL
CCCCCHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEE
HVREIGGRAEAGLMAARSHALVPIDHCPITVPALHPAPEVARRLAAPLGHGRKPLDVAVT
EEECCCCCCHHHHHHHCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEE
ATDQGLDVDLRGHGPVSAGVGAALVRIAGELGLARLSLHGERLMEAEPVSVTAGDPAGGT
ECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCEEECCCCCCCC
SGAARLYPAPGGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAAVH
CCCCEEEECCCCCEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHH
AVESDAAALAGLDRAARAASGLRRITSERRDLFRRPLLPTELDPFDAVVFDPPRAGAEAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHH
ARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVTPVDQFRHSGHVEMVGVFRRE
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEECCC
PARRR
CCCCC
>Mature Secondary Structure 
SEPANSETVTIRALGARGDGIAEDGTLVPYTLPGERAEIRREARRGVLLGVAQASPDRV
CCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHCCEEEEEECCCCCCC
EPFCPYYMRCGGCRTQHLARPAELAWKRDLVAQALSQARLDVTPGPTLDAHGAGRRRLTL
CCCCCHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCEEEEE
HVREIGGRAEAGLMAARSHALVPIDHCPITVPALHPAPEVARRLAAPLGHGRKPLDVAVT
EEECCCCCCHHHHHHHCCCCEEEECCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEE
ATDQGLDVDLRGHGPVSAGVGAALVRIAGELGLARLSLHGERLMEAEPVSVTAGDPAGGT
ECCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCEEEECCHHHHCCCCCCEEECCCCCCCC
SGAARLYPAPGGFLQATAAGQATLCDLTLAALGPRVRRVADLFAGCGPLTLAIARTAAVH
CCCCEEEECCCCCEEECCCCCCHHHHHHHHHHCHHHHHHHHHHHCCCHHHHHHHHHHHHH
AVESDAAALAGLDRAARAASGLRRITSERRDLFRRPLLPTELDPFDAVVFDPPRAGAEAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCHHH
ARQIAAARVPLVIGVACDAGTFARDAATLVAGGYRLETVTPVDQFRHSGHVEMVGVFRRE
HHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEEECCC
PARRR
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA