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The map label for this gene is yeaM [H]

Identifier: 170750043

GI number: 170750043

Start: 3877849

End: 3878667

Strand: Reverse

Name: yeaM [H]

Synonym: Mrad2831_3644

Alternate gene names: 170750043

Gene position: 3878667-3877849 (Counterclockwise)

Preceding gene: 170750046

Following gene: 170750041

Centisome position: 63.82

GC content: 77.17

Gene sequence:

>819_bases
ATGTACGCGAACGGGCCAATGTTGACGGGGGCGCGCGCCGCCGCGGGGCGGTCGACAGAGGCGGCCGACTATCAGGACGT
ACCCCGCCCGGTCGCGGTGATGCCCAAGACCTACGCGGCCGGGATGCATCTCGACCGGCACTTCCATCCCCGCGCGCAGC
TGCTCTACGCCACGTCCGGGCTGATGATGGCCTTCGCGGACGACGGCACCTGGGTCGTTCCCGAGGGGCACGCCCTCTGG
ATCCCGCCGCGGCTGCCGCACGCGGTCGCGACCCACGGCGCGGTCTCGATGTGCTCGGCCTATCTCGATCCCGCCGCGGT
CCGGTCCTTCCCGGCGAGTTGCCGGGTGATCGCGGTGTCGCGGCTCATGGCCTCGGCGCTCACGGCGCTGGCGGAGGAGC
CGGTGCTCTACGCGGTCGACGGCCGCGGCGGCCACCTCGCCGCCCTGGTGCTCGACGAGATCGGCCGGGCCCCCGCGACG
CCGCTGGCGCTGCCGCTCCCGCGCGACCCGCGCCTGCGCCGCGTCTGCCTCGCGCTGATCGAGGATCCGGCCTCGGAGGC
CGATCTCGACGCCTGGGCCGACCGGGCCGGCGCGAGCCGCCGCACGCTCACGCGCGGCTTCCGTGCGGAAACGGGCCTCA
GCTTCGGCGACTGGCGGGCCCGGGCCCGCGTGATCCGGGCGCTGGCGCTCGCGGCCGAGGGGCGGCCGCCGCGGGCGGTC
GCGGCGGCGGTGGGCTACCGAAGCGCGCAGGCCCTGCGGACGACCGTGGCGCGGGTGCTCGGCCCGGAGCGCCCGCTCCG
CGGCGCCGGGCCGGCTTGA

Upstream 100 bases:

>100_bases
AAGCGCAGGGTGCGGCGGGACAGTGTATCCGAATCCATCGCGGCGTATCCTCCGGGACGGCACCCTGATAGCCTGACCCG
ATGGCGGTGTTGGGCCGGAT

Downstream 100 bases:

>100_bases
GCGCCGCCTAGGCCGCCTGCCGGGGCTCGTCGAACAGCTCGTCGGCCGGGCCGAAGAACTCGAACTTCACCCGCTCGGCC
GGGACGCCGCGGCGCAGCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MYANGPMLTGARAAAGRSTEAADYQDVPRPVAVMPKTYAAGMHLDRHFHPRAQLLYATSGLMMAFADDGTWVVPEGHALW
IPPRLPHAVATHGAVSMCSAYLDPAAVRSFPASCRVIAVSRLMASALTALAEEPVLYAVDGRGGHLAALVLDEIGRAPAT
PLALPLPRDPRLRRVCLALIEDPASEADLDAWADRAGASRRTLTRGFRAETGLSFGDWRARARVIRALALAAEGRPPRAV
AAAVGYRSAQALRTTVARVLGPERPLRGAGPA

Sequences:

>Translated_272_residues
MYANGPMLTGARAAAGRSTEAADYQDVPRPVAVMPKTYAAGMHLDRHFHPRAQLLYATSGLMMAFADDGTWVVPEGHALW
IPPRLPHAVATHGAVSMCSAYLDPAAVRSFPASCRVIAVSRLMASALTALAEEPVLYAVDGRGGHLAALVLDEIGRAPAT
PLALPLPRDPRLRRVCLALIEDPASEADLDAWADRAGASRRTLTRGFRAETGLSFGDWRARARVIRALALAAEGRPPRAV
AAAVGYRSAQALRTTVARVLGPERPLRGAGPA
>Mature_272_residues
MYANGPMLTGARAAAGRSTEAADYQDVPRPVAVMPKTYAAGMHLDRHFHPRAQLLYATSGLMMAFADDGTWVVPEGHALW
IPPRLPHAVATHGAVSMCSAYLDPAAVRSFPASCRVIAVSRLMASALTALAEEPVLYAVDGRGGHLAALVLDEIGRAPAT
PLALPLPRDPRLRRVCLALIEDPASEADLDAWADRAGASRRTLTRGFRAETGLSFGDWRARARVIRALALAAEGRPPRAV
AAAVGYRSAQALRTTVARVLGPERPLRGAGPA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=215, Percent_Identity=28.8372093023256, Blast_Score=98, Evalue=5e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 28834; Mature: 28834

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYANGPMLTGARAAAGRSTEAADYQDVPRPVAVMPKTYAAGMHLDRHFHPRAQLLYATSG
CCCCCCCCCCCHHHCCCCCCCCCHHCCCCCEEECCCHHHHCCCCCCCCCCHHEEEEEECC
LMMAFADDGTWVVPEGHALWIPPRLPHAVATHGAVSMCSAYLDPAAVRSFPASCRVIAVS
EEEEEECCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHH
RLMASALTALAEEPVLYAVDGRGGHLAALVLDEIGRAPATPLALPLPRDPRLRRVCLALI
HHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHH
EDPASEADLDAWADRAGASRRTLTRGFRAETGLSFGDWRARARVIRALALAAEGRPPRAV
HCCCCCCHHHHHHHHCCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
AAAVGYRSAQALRTTVARVLGPERPLRGAGPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MYANGPMLTGARAAAGRSTEAADYQDVPRPVAVMPKTYAAGMHLDRHFHPRAQLLYATSG
CCCCCCCCCCCHHHCCCCCCCCCHHCCCCCEEECCCHHHHCCCCCCCCCCHHEEEEEECC
LMMAFADDGTWVVPEGHALWIPPRLPHAVATHGAVSMCSAYLDPAAVRSFPASCRVIAVS
EEEEEECCCCEEECCCCEEEECCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHH
RLMASALTALAEEPVLYAVDGRGGHLAALVLDEIGRAPATPLALPLPRDPRLRRVCLALI
HHHHHHHHHHHCCCEEEEECCCCCEEHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHH
EDPASEADLDAWADRAGASRRTLTRGFRAETGLSFGDWRARARVIRALALAAEGRPPRAV
HCCCCCCHHHHHHHHCCCCHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH
AAAVGYRSAQALRTTVARVLGPERPLRGAGPA
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]