| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is glnD [H]
Identifier: 170749943
GI number: 170749943
Start: 3762439
End: 3765246
Strand: Direct
Name: glnD [H]
Synonym: Mrad2831_3543
Alternate gene names: 170749943
Gene position: 3762439-3765246 (Clockwise)
Preceding gene: 170749942
Following gene: 170749944
Centisome position: 61.9
GC content: 69.94
Gene sequence:
>2808_bases ATGCTAACGGGAACCATGTTCGATCCCGTCGCCGCCCTCGATACGGTCCTTGAGAACCTCGACCGCGAGGCCCGCGAGCC CACCAAGCTCCGGGCCGCGCTGGTGCCGCAGCTGCGCCGGGTGATCGAGGAGGGCCACCGGGCCGCCGAGGCGCAGCTCC TCGAGGATCGCAACGGGCTGCTCTGCGCGCAGACGCTGTCGAACCTCACCGACGCGGTGGTCCGGGCGATCCACGACGCC GTGGTCTGGCGGCTCTACCCCAACGACAACCCGTCGACCGGCGAGCAGCTCGCCGTGGTCGCCACCGGCGGCTACGGCCG GGGCACGATGGCGCCGGGCTCGGACATCGATCTGCTGTTCCTGCTGCCCTACAAGCAGACCGCGTGGTCCGAGAGCGTCG TCGAGGGGATGCTCTACGTCCTGTGGGACCTGAAGCTGAAGGTCGGTCACGCCACCCGCTCGGTCGAGGAGTGCCTGCGC GAGGCGCGGGCCGACATGACGATCCGCACCGCCCTCCTGGAGGCGCGGTTCCTGTTCGGCACCCGTGTCCTCTACGAGGA GCTCGTGACGCGCTTCGACGCCGAACTCGTGGTCGGCTCCGCCGCCGAGTTCGTGGAGGCGAAGCTGCGCGAGCGCGACA TGCGCGTGTCCAAGGCCGGCACCTCGCGCTACCTCGTCGAGCCCAACGTCAAGGACGGCAAGGGCGGCCTGCGCGACCTG AACACGCTGTTCTGGATCGCCAAGTACACCTACCGGGTCCGCGACCAGATCGAGCTCGTGAGCGCCGGCCTGTTCACCCC GGAGGAGTACGCGCTGTTCGAGCGCTGCGAGGAGTTCCTGTGGCGGGTGCGCTGCCACATGCACTTCGCCACGAAGCGCG CCGAGGAGCGCCTGTCCTTCGGCCTGCAGCCGCGGATCGCCGAGCGCTTCGGCTACGAGGCCCGCGGCGGCCTCTCCGGC GTCGAGCGCTTCATGAAGGCCTATTTCCGCATCGCCAAGGATGTCGGCGATCTCACCGCCATCGTCTGCGCGGAGCTGGA GGCGCGCCACGCCAAGCGCACGCCGGTGCTCGACCGCTGGATCGGCCGGTTTCGCGACCGCTTCCGGGCGACCGCCATGG AGGCGGAGGATTTCTGGATCGACCACGGCCGGGTGAACCTGCGCGCGGAGGACGCCTTCGAGCGCGACCCGGTCAACCTG ATCCGGCTGTTCTGGCTCGCCGACCGGCACAACCTCGCGATCCACCCGGATGCCAAGCGGCTGGCCAACCGGTCCCTGCG CCTCGTCAACCCGTCGCTGCGCGTGGACCCCGAGGCGAACCGGCTGTTCGTCGAGATCCTGACCTCGCGGAACGCGCCGG AGGAGGCGCTGCGCGAGATGAACGAGGCGGGCGTGCTCGGCCGGTTCATCCCGGATTTCGGCCGCATCGTCGCGATGATG CAGTTCAACATGTATCACCACTTCACGGTGGACGAGCACCTGCTGCGCTCGGTCGGCGTGCTGGCGGACATCGAGTCGGG CCGGGCCCAGGAGACCTACCCGCTGGTCTCGCGCCTCGTGCACTCGATCCACAACCGCACCGCGCTCTACGTGGCGATCC TGCTGCACGACATCGCCAAGGGCCGGCCGGAGGATCACTCCATCGCGGGCGCCGCCATCGCCGAGAAGCTCTGCCCGCGC TTCGGCCTGAATCAGGCCGAGACCGAGACGGTGCGCTGGCTCGTCGAACACCACCTGCTGATGTCGATGACCGCGCAGAG CCGCGACCTCTCGGACGCCAAGACCATCGAGCGTTTCGCCGCGAGCGTGCAGAGCCTGGAGCGGCTGAAGCTCCTGACCA TCCTGACGGTGGCCGACATCACCGCCGTCGGGCCCGGCGTCTGGACAGCCTGGAAGGGCACGCTGCTCCGCACGCTCTAC GACGAGACCGAGGTCTACCTGTCGGGCGGCCATTCCGAGATCGCCCGCACCGACCGGGTGCGCCTCGTCCAGATGGGCCT GCGGGAGCAGCTGCCCGGCTGGGGCTCGGAGGAGTTCGACACCTACGCGGCCCGCCACAGCCAGGCCTACTGGCTCAAGG TCGACGGCACGCGCCAGCTCAAGAACGCGATCTTCCTGCGCGACGTCGTGCGCGACGGGCGGACCAGCGCGACCGACGTG GCCCTCGATCCCGTCCGGGGCGTGACCGAGATCACGGTCTACTCGCCGGACCATCCCCGCCTGCTCGCCATCGTCACCGG CGCCTGCGCGGCGGCCGGCAGCAACATCGTCGACGCGCAGATCTTCACCACCACGGACGGGTTCGCCCTCGACACGATCT TCATCTCCCGCGCCTTCGAGCGCGACGACGACGAGCTGCGGCGGACCAAGCGCATCACCGCGGCGATCGAGCGGGCGCTC AAAGGGGAGATCAAGATCGCCGACCTCGTGGCCGACAAGCACCCGCCGACGAGCACCCGCGCCAAGACCTTCCCGGTCCC GCCGGACGTCATCATCGACAACGCCCTGTCGAGCCGGGAGACCGTGGTGGAGATCACCGGCCTCGACCGGCCGGGCCTGC TCTACGAGCTGACCACCGCCTTCAGCCGGCTGTCGCTCAACATCACGTCGGCGCACGTGGCGACCTTCGGCGAGCGCGCC GTGGACGTCTTCTACGTCACCGACCTCACCGGCACGCGGGTGACGCAGCCCGACCGCCAGGCCGCGATCCGGGCCGCCGT GATGGACGTGTTCGCGCACGACGTCGCGACCCTCAAGGCCGAGGGTCTGGAGGCGCTCGTGGCGGCGCCGCCGCCGCGCG AGGCGTGA
Upstream 100 bases:
>100_bases CCGGGCCGCGACCCGCAACCGCACGGCGCGGCTGCTCGCCCTCGACCTGCCGGCCGCGGAATAGCGGCGGGCGCCGCATG GCTGGCGGCGTAGGGATATC
Downstream 100 bases:
>100_bases GCGTGCGGGTTGATTTCGCGGCCCCGTGGCCAGATATCAGCGCCGATTCCATCATCCCTCACCGATTCCCGCCCACGACT GAAACGTGATGACGAGCAAC
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 935; Mature: 935
Protein sequence:
>935_residues MLTGTMFDPVAALDTVLENLDREAREPTKLRAALVPQLRRVIEEGHRAAEAQLLEDRNGLLCAQTLSNLTDAVVRAIHDA VVWRLYPNDNPSTGEQLAVVATGGYGRGTMAPGSDIDLLFLLPYKQTAWSESVVEGMLYVLWDLKLKVGHATRSVEECLR EARADMTIRTALLEARFLFGTRVLYEELVTRFDAELVVGSAAEFVEAKLRERDMRVSKAGTSRYLVEPNVKDGKGGLRDL NTLFWIAKYTYRVRDQIELVSAGLFTPEEYALFERCEEFLWRVRCHMHFATKRAEERLSFGLQPRIAERFGYEARGGLSG VERFMKAYFRIAKDVGDLTAIVCAELEARHAKRTPVLDRWIGRFRDRFRATAMEAEDFWIDHGRVNLRAEDAFERDPVNL IRLFWLADRHNLAIHPDAKRLANRSLRLVNPSLRVDPEANRLFVEILTSRNAPEEALREMNEAGVLGRFIPDFGRIVAMM QFNMYHHFTVDEHLLRSVGVLADIESGRAQETYPLVSRLVHSIHNRTALYVAILLHDIAKGRPEDHSIAGAAIAEKLCPR FGLNQAETETVRWLVEHHLLMSMTAQSRDLSDAKTIERFAASVQSLERLKLLTILTVADITAVGPGVWTAWKGTLLRTLY DETEVYLSGGHSEIARTDRVRLVQMGLREQLPGWGSEEFDTYAARHSQAYWLKVDGTRQLKNAIFLRDVVRDGRTSATDV ALDPVRGVTEITVYSPDHPRLLAIVTGACAAAGSNIVDAQIFTTTDGFALDTIFISRAFERDDDELRRTKRITAAIERAL KGEIKIADLVADKHPPTSTRAKTFPVPPDVIIDNALSSRETVVEITGLDRPGLLYELTTAFSRLSLNITSAHVATFGERA VDVFYVTDLTGTRVTQPDRQAAIRAAVMDVFAHDVATLKAEGLEALVAAPPPREA
Sequences:
>Translated_935_residues MLTGTMFDPVAALDTVLENLDREAREPTKLRAALVPQLRRVIEEGHRAAEAQLLEDRNGLLCAQTLSNLTDAVVRAIHDA VVWRLYPNDNPSTGEQLAVVATGGYGRGTMAPGSDIDLLFLLPYKQTAWSESVVEGMLYVLWDLKLKVGHATRSVEECLR EARADMTIRTALLEARFLFGTRVLYEELVTRFDAELVVGSAAEFVEAKLRERDMRVSKAGTSRYLVEPNVKDGKGGLRDL NTLFWIAKYTYRVRDQIELVSAGLFTPEEYALFERCEEFLWRVRCHMHFATKRAEERLSFGLQPRIAERFGYEARGGLSG VERFMKAYFRIAKDVGDLTAIVCAELEARHAKRTPVLDRWIGRFRDRFRATAMEAEDFWIDHGRVNLRAEDAFERDPVNL IRLFWLADRHNLAIHPDAKRLANRSLRLVNPSLRVDPEANRLFVEILTSRNAPEEALREMNEAGVLGRFIPDFGRIVAMM QFNMYHHFTVDEHLLRSVGVLADIESGRAQETYPLVSRLVHSIHNRTALYVAILLHDIAKGRPEDHSIAGAAIAEKLCPR FGLNQAETETVRWLVEHHLLMSMTAQSRDLSDAKTIERFAASVQSLERLKLLTILTVADITAVGPGVWTAWKGTLLRTLY DETEVYLSGGHSEIARTDRVRLVQMGLREQLPGWGSEEFDTYAARHSQAYWLKVDGTRQLKNAIFLRDVVRDGRTSATDV ALDPVRGVTEITVYSPDHPRLLAIVTGACAAAGSNIVDAQIFTTTDGFALDTIFISRAFERDDDELRRTKRITAAIERAL KGEIKIADLVADKHPPTSTRAKTFPVPPDVIIDNALSSRETVVEITGLDRPGLLYELTTAFSRLSLNITSAHVATFGERA VDVFYVTDLTGTRVTQPDRQAAIRAAVMDVFAHDVATLKAEGLEALVAAPPPREA >Mature_935_residues MLTGTMFDPVAALDTVLENLDREAREPTKLRAALVPQLRRVIEEGHRAAEAQLLEDRNGLLCAQTLSNLTDAVVRAIHDA VVWRLYPNDNPSTGEQLAVVATGGYGRGTMAPGSDIDLLFLLPYKQTAWSESVVEGMLYVLWDLKLKVGHATRSVEECLR EARADMTIRTALLEARFLFGTRVLYEELVTRFDAELVVGSAAEFVEAKLRERDMRVSKAGTSRYLVEPNVKDGKGGLRDL NTLFWIAKYTYRVRDQIELVSAGLFTPEEYALFERCEEFLWRVRCHMHFATKRAEERLSFGLQPRIAERFGYEARGGLSG VERFMKAYFRIAKDVGDLTAIVCAELEARHAKRTPVLDRWIGRFRDRFRATAMEAEDFWIDHGRVNLRAEDAFERDPVNL IRLFWLADRHNLAIHPDAKRLANRSLRLVNPSLRVDPEANRLFVEILTSRNAPEEALREMNEAGVLGRFIPDFGRIVAMM QFNMYHHFTVDEHLLRSVGVLADIESGRAQETYPLVSRLVHSIHNRTALYVAILLHDIAKGRPEDHSIAGAAIAEKLCPR FGLNQAETETVRWLVEHHLLMSMTAQSRDLSDAKTIERFAASVQSLERLKLLTILTVADITAVGPGVWTAWKGTLLRTLY DETEVYLSGGHSEIARTDRVRLVQMGLREQLPGWGSEEFDTYAARHSQAYWLKVDGTRQLKNAIFLRDVVRDGRTSATDV ALDPVRGVTEITVYSPDHPRLLAIVTGACAAAGSNIVDAQIFTTTDGFALDTIFISRAFERDDDELRRTKRITAAIERAL KGEIKIADLVADKHPPTSTRAKTFPVPPDVIIDNALSSRETVVEITGLDRPGLLYELTTAFSRLSLNITSAHVATFGERA VDVFYVTDLTGTRVTQPDRQAAIRAAVMDVFAHDVATLKAEGLEALVAAPPPREA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=845, Percent_Identity=33.7278106508876, Blast_Score=401, Evalue=1e-112,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 104903; Mature: 104903
Theoretical pI: Translated: 6.46; Mature: 6.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTGTMFDPVAALDTVLENLDREAREPTKLRAALVPQLRRVIEEGHRAAEAQLLEDRNGL CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE LCAQTLSNLTDAVVRAIHDAVVWRLYPNDNPSTGEQLAVVATGGYGRGTMAPGSDIDLLF EHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE LLPYKQTAWSESVVEGMLYVLWDLKLKVGHATRSVEECLREARADMTIRTALLEARFLFG EECCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH TRVLYEELVTRFDAELVVGSAAEFVEAKLRERDMRVSKAGTSRYLVEPNVKDGKGGLRDL HHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHH NTLFWIAKYTYRVRDQIELVSAGLFTPEEYALFERCEEFLWRVRCHMHFATKRAEERLSF HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLQPRIAERFGYEARGGLSGVERFMKAYFRIAKDVGDLTAIVCAELEARHAKRTPVLDRW CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IGRFRDRFRATAMEAEDFWIDHGRVNLRAEDAFERDPVNLIRLFWLADRHNLAIHPDAKR HHHHHHHHHHHHCCHHHEEEECCEEEEEECCCCCCCHHHHHHHHHEECCCCEEECCCHHH LANRSLRLVNPSLRVDPEANRLFVEILTSRNAPEEALREMNEAGVLGRFIPDFGRIVAMM HHCCCEEEECCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH QFNMYHHFTVDEHLLRSVGVLADIESGRAQETYPLVSRLVHSIHNRTALYVAILLHDIAK HHHHHEECCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC GRPEDHSIAGAAIAEKLCPRFGLNQAETETVRWLVEHHLLMSMTAQSRDLSDAKTIERFA CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH ASVQSLERLKLLTILTVADITAVGPGVWTAWKGTLLRTLYDETEVYLSGGHSEIARTDRV HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH RLVQMGLREQLPGWGSEEFDTYAARHSQAYWLKVDGTRQLKNAIFLRDVVRDGRTSATDV HHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCE ALDPVRGVTEITVYSPDHPRLLAIVTGACAAAGSNIVDAQIFTTTDGFALDTIFISRAFE EECCCCCCEEEEEECCCCCEEEEEEHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHC RDDDELRRTKRITAAIERALKGEIKIADLVADKHPPTSTRAKTFPVPPDVIIDNALSSRE CCHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC TVVEITGLDRPGLLYELTTAFSRLSLNITSAHVATFGERAVDVFYVTDLTGTRVTQPDRQ EEEEEECCCCCCHHHHHHHHHHHHEEEEEHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH AAIRAAVMDVFAHDVATLKAEGLEALVAAPPPREA HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC >Mature Secondary Structure MLTGTMFDPVAALDTVLENLDREAREPTKLRAALVPQLRRVIEEGHRAAEAQLLEDRNGL CCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE LCAQTLSNLTDAVVRAIHDAVVWRLYPNDNPSTGEQLAVVATGGYGRGTMAPGSDIDLLF EHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE LLPYKQTAWSESVVEGMLYVLWDLKLKVGHATRSVEECLREARADMTIRTALLEARFLFG EECCCHHHHHHHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH TRVLYEELVTRFDAELVVGSAAEFVEAKLRERDMRVSKAGTSRYLVEPNVKDGKGGLRDL HHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHH NTLFWIAKYTYRVRDQIELVSAGLFTPEEYALFERCEEFLWRVRCHMHFATKRAEERLSF HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLQPRIAERFGYEARGGLSGVERFMKAYFRIAKDVGDLTAIVCAELEARHAKRTPVLDRW CCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH IGRFRDRFRATAMEAEDFWIDHGRVNLRAEDAFERDPVNLIRLFWLADRHNLAIHPDAKR HHHHHHHHHHHHCCHHHEEEECCEEEEEECCCCCCCHHHHHHHHHEECCCCEEECCCHHH LANRSLRLVNPSLRVDPEANRLFVEILTSRNAPEEALREMNEAGVLGRFIPDFGRIVAMM HHCCCEEEECCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH QFNMYHHFTVDEHLLRSVGVLADIESGRAQETYPLVSRLVHSIHNRTALYVAILLHDIAK HHHHHEECCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHC GRPEDHSIAGAAIAEKLCPRFGLNQAETETVRWLVEHHLLMSMTAQSRDLSDAKTIERFA CCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH ASVQSLERLKLLTILTVADITAVGPGVWTAWKGTLLRTLYDETEVYLSGGHSEIARTDRV HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHH RLVQMGLREQLPGWGSEEFDTYAARHSQAYWLKVDGTRQLKNAIFLRDVVRDGRTSATDV HHHHHHHHHHCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCE ALDPVRGVTEITVYSPDHPRLLAIVTGACAAAGSNIVDAQIFTTTDGFALDTIFISRAFE EECCCCCCEEEEEECCCCCEEEEEEHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHC RDDDELRRTKRITAAIERALKGEIKIADLVADKHPPTSTRAKTFPVPPDVIIDNALSSRE CCHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCC TVVEITGLDRPGLLYELTTAFSRLSLNITSAHVATFGERAVDVFYVTDLTGTRVTQPDRQ EEEEEECCCCCCHHHHHHHHHHHHEEEEEHHHHHHHCCCCEEEEEEEECCCCCCCCCHHH AAIRAAVMDVFAHDVATLKAEGLEALVAAPPPREA HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA