| Definition | Methylobacterium radiotolerans JCM 2831 chromosome, complete genome. |
|---|---|
| Accession | NC_010505 |
| Length | 6,077,833 |
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The map label for this gene is 170749939
Identifier: 170749939
GI number: 170749939
Start: 3757454
End: 3758935
Strand: Reverse
Name: 170749939
Synonym: Mrad2831_3539
Alternate gene names: NA
Gene position: 3758935-3757454 (Counterclockwise)
Preceding gene: 170749940
Following gene: 170749938
Centisome position: 61.85
GC content: 73.68
Gene sequence:
>1482_bases ATGGGGGCGGGGCACGCGCCGCGTCCCTCGCCCCGCGGTGACGGGGCGGATCCACGGTCGCCGCGCGCCGTCACGCTGCG CCCCGGCGCCGATCTCGACGGTTTCCGCAAGGCCGTCCGGAGCCTCGTCGCGCAGGGCGTCGCGCCCGGAGCCGTGACGT GGTCGGTGACGGACTCGCCCGGCCTGTTCAGCGGCGACGGGGAGCCGGCCGCCGGAGCGCCGCTCGTCCTGCCGAAGGCC GTCGCCAGCCTGATCCCGCAGGTGATCCCTCACCGCGATCCGGAGCGCTACGGCCTGCTCTACGCGCTGGTCTGGCGGGT CTGCCGCGGCGAGCGCCACCTGATGGAGGTCGGCAGCGACCCGCTGGTCCACCGCCTGCACCGGATGGCGAAGGCGATCG GGCGCGACCTCCACAAGATGCACGCCTTCCTGCGCTTCCGCCGGGCGGAGGGACCGGACGGCGAGCGCTACGTCGCGTGG TTCGAGCCGGACCACCACATCCTCGAGGCGGCGGCGCCGTTCTTCGTGAACCGCTTCCGCGGGATGCGCTGGTCGATCCT GACCCCCGACGGATCCGCCCACTGGGACACCGAGACCCTGACCTTCGGGCCGGCCGGGGACCGGGCGCAGCTCCCCGAGG GCGACGGCTTCGAGGCGGGCTGGCAGACCTACTACGAGAGCACGTTCAACCCGGCCCGCACCAACCTGAAGGCCATGCGG GCGGAGATGCCCAAGAAGTACTGGCACAACATGCCCGAGACGGCCGCGATCCCCGCCCTGGTCCGGGCGGCGGCCGGGCG CACCGTAGCCATGATCGAGAGGGAGCCGACCATGCCCACACGCCGCGAACCCGCCCGGGCCGTCGCCGCCATGGCCGACC AGGATCCGAAGACCCTGGAGGAGCTGAACGCGATCATCCGCCGGACCGAGCCGCTGGTCCCCGGCGCCACCCAGGCCGTG CTCGGCGAGGGCCCGGTCGGCGCAACGGTGGCCTTCGTGGGCGAGCAGCCCGGCGACCAGGAGGACCGGCAGGGCCGCCC CTTCGTCGGGCCCGCCGGCCAGCTGCTCTCCCGCGCCATGGCCGAGGCCGGGATCGACCGGGGCGCGAGCTACCTGACGA ACGCGGTCAAGCACTTCAAGTTCGAGGAGCGCGGCAAGCGCCGCATCCACCAGAAGCCGACCGCCGGCGAGGTCAGCCAC TATCGGTGGTGGCTCGACCGGGAACTCGAATTCGTCGGCCCGAAGCTCGTGGTGGCGCTCGGCGCGACCGCCGTCCTGGC GCTGACCGGCAAGGCGATCCCGATCACGCGGGCGCGCGGCCCGTTCCGCTTCGACCGGCACGACAACCGCTTCCAGGGCT TCATCACGGTCCACCCGTCCTACCTGCTCCGGCTGCCGGACGAGGCGAAGGCGGAGGCCTACGCGGCCTTCGTGGACGAC CTGCGCCGGGTGGAGGCGCTCGGGCGCGAGCTCGCGGCCTGA
Upstream 100 bases:
>100_bases CGTTCCTCGTGGCCGCCGATCATCGCCCCGTCGCGCTCACGGACCGGCTCGACCTCCGGGCGCGGCTGGTCGAGCCCGCG GCGCAGCTGAGCCTGTTCTG
Downstream 100 bases:
>100_bases TCCTCCCCTGCCGCGGTTCTGCTATGCTGGCGGCCGCCGATTCTCTCCGGTCCCGCCGCCATGGACAAGCTCGCCGCCCT CGACATCCTGCGCGCCAACG
Product: uracil-DNA glycosylase superfamily protein
Products: diphosphate; DNAn+1
Alternate protein names: Uracil-DNA Glycosylase; DNA Polymerase Related Protein; Uracil-DNA Glycosylase Superfamily Protein; Phage SPO1 DNA Polymerase-Like Protein; Uracil DNA Glycosylase Superfamily Protein; Uracil-DNA Glycosylase Superfamily; DNA Polymerase Bacteriophage-Type; DNA Polymerase; DNA-Directed DNA Polymerase Protein; Uracil-DNA Glycosylase Family 4 Protein; Uracil DNA Glycosylase; Phage Spo1 DNA Polymerase-Related Protein; Phage DNA Polymerase; DNA-Directed DNA Polymerase; DNA Polymerase-Related Protein; Uracil-DNA Glycosylase-Like Protein; Bacteriophage-Type DNA Polymerase N-Terminal Domain Protein; Helicase/Glycosylase; Uracil DNA Glycosylase Protein; Arginine Biosynthesis Bifunctional Protein ArgJ; Uracil DNA Glycosylase Superfamily; Phage SPO1 DNA Polymerase; Phage Spo1 DNA Polymerase Domain Protein; Uracil-DNA Glycosylase C-Terminal Domain Protein; Uracil DNA Glycosylase Family Protein; Transcriptional Regulator Fis Family; N-Terminus Of Phage SPO1 DNA Polymerase; Fis Family Transcriptional Regulator; DNA Polymerase-Like Protein; Leucyl-TRNA Synthetase
Number of amino acids: Translated: 493; Mature: 492
Protein sequence:
>493_residues MGAGHAPRPSPRGDGADPRSPRAVTLRPGADLDGFRKAVRSLVAQGVAPGAVTWSVTDSPGLFSGDGEPAAGAPLVLPKA VASLIPQVIPHRDPERYGLLYALVWRVCRGERHLMEVGSDPLVHRLHRMAKAIGRDLHKMHAFLRFRRAEGPDGERYVAW FEPDHHILEAAAPFFVNRFRGMRWSILTPDGSAHWDTETLTFGPAGDRAQLPEGDGFEAGWQTYYESTFNPARTNLKAMR AEMPKKYWHNMPETAAIPALVRAAAGRTVAMIEREPTMPTRREPARAVAAMADQDPKTLEELNAIIRRTEPLVPGATQAV LGEGPVGATVAFVGEQPGDQEDRQGRPFVGPAGQLLSRAMAEAGIDRGASYLTNAVKHFKFEERGKRRIHQKPTAGEVSH YRWWLDRELEFVGPKLVVALGATAVLALTGKAIPITRARGPFRFDRHDNRFQGFITVHPSYLLRLPDEAKAEAYAAFVDD LRRVEALGRELAA
Sequences:
>Translated_493_residues MGAGHAPRPSPRGDGADPRSPRAVTLRPGADLDGFRKAVRSLVAQGVAPGAVTWSVTDSPGLFSGDGEPAAGAPLVLPKA VASLIPQVIPHRDPERYGLLYALVWRVCRGERHLMEVGSDPLVHRLHRMAKAIGRDLHKMHAFLRFRRAEGPDGERYVAW FEPDHHILEAAAPFFVNRFRGMRWSILTPDGSAHWDTETLTFGPAGDRAQLPEGDGFEAGWQTYYESTFNPARTNLKAMR AEMPKKYWHNMPETAAIPALVRAAAGRTVAMIEREPTMPTRREPARAVAAMADQDPKTLEELNAIIRRTEPLVPGATQAV LGEGPVGATVAFVGEQPGDQEDRQGRPFVGPAGQLLSRAMAEAGIDRGASYLTNAVKHFKFEERGKRRIHQKPTAGEVSH YRWWLDRELEFVGPKLVVALGATAVLALTGKAIPITRARGPFRFDRHDNRFQGFITVHPSYLLRLPDEAKAEAYAAFVDD LRRVEALGRELAA >Mature_492_residues GAGHAPRPSPRGDGADPRSPRAVTLRPGADLDGFRKAVRSLVAQGVAPGAVTWSVTDSPGLFSGDGEPAAGAPLVLPKAV ASLIPQVIPHRDPERYGLLYALVWRVCRGERHLMEVGSDPLVHRLHRMAKAIGRDLHKMHAFLRFRRAEGPDGERYVAWF EPDHHILEAAAPFFVNRFRGMRWSILTPDGSAHWDTETLTFGPAGDRAQLPEGDGFEAGWQTYYESTFNPARTNLKAMRA EMPKKYWHNMPETAAIPALVRAAAGRTVAMIEREPTMPTRREPARAVAAMADQDPKTLEELNAIIRRTEPLVPGATQAVL GEGPVGATVAFVGEQPGDQEDRQGRPFVGPAGQLLSRAMAEAGIDRGASYLTNAVKHFKFEERGKRRIHQKPTAGEVSHY RWWLDRELEFVGPKLVVALGATAVLALTGKAIPITRARGPFRFDRHDNRFQGFITVHPSYLLRLPDEAKAEAYAAFVDDL RRVEALGRELAA
Specific function: Unknown
COG id: COG1573
COG function: function code L; Uracil-DNA glycosylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.7.7.7
Molecular weight: Translated: 54263; Mature: 54132
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGAGHAPRPSPRGDGADPRSPRAVTLRPGADLDGFRKAVRSLVAQGVAPGAVTWSVTDSP CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC GLFSGDGEPAAGAPLVLPKAVASLIPQVIPHRDPERYGLLYALVWRVCRGERHLMEVGSD CCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCC PLVHRLHRMAKAIGRDLHKMHAFLRFRRAEGPDGERYVAWFEPDHHILEAAAPFFVNRFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC GMRWSILTPDGSAHWDTETLTFGPAGDRAQLPEGDGFEAGWQTYYESTFNPARTNLKAMR CCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH AEMPKKYWHNMPETAAIPALVRAAAGRTVAMIEREPTMPTRREPARAVAAMADQDPKTLE HHCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHH ELNAIIRRTEPLVPGATQAVLGEGPVGATVAFVGEQPGDQEDRQGRPFVGPAGQLLSRAM HHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH AEAGIDRGASYLTNAVKHFKFEERGKRRIHQKPTAGEVSHYRWWLDRELEFVGPKLVVAL HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHHHH GATAVLALTGKAIPITRARGPFRFDRHDNRFQGFITVHPSYLLRLPDEAKAEAYAAFVDD HHHHEEHCCCCCCEEECCCCCCCCCCCCCCEEEEEEECHHHEEECCCHHHHHHHHHHHHH LRRVEALGRELAA HHHHHHHHHHHCC >Mature Secondary Structure GAGHAPRPSPRGDGADPRSPRAVTLRPGADLDGFRKAVRSLVAQGVAPGAVTWSVTDSP CCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC GLFSGDGEPAAGAPLVLPKAVASLIPQVIPHRDPERYGLLYALVWRVCRGERHLMEVGSD CCCCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCC PLVHRLHRMAKAIGRDLHKMHAFLRFRRAEGPDGERYVAWFEPDHHILEAAAPFFVNRFR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHC GMRWSILTPDGSAHWDTETLTFGPAGDRAQLPEGDGFEAGWQTYYESTFNPARTNLKAMR CCEEEEECCCCCCCCCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHH AEMPKKYWHNMPETAAIPALVRAAAGRTVAMIEREPTMPTRREPARAVAAMADQDPKTLE HHCCHHHHCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHH ELNAIIRRTEPLVPGATQAVLGEGPVGATVAFVGEQPGDQEDRQGRPFVGPAGQLLSRAM HHHHHHHHCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH AEAGIDRGASYLTNAVKHFKFEERGKRRIHQKPTAGEVSHYRWWLDRELEFVGPKLVVAL HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHCCHHHHHH GATAVLALTGKAIPITRARGPFRFDRHDNRFQGFITVHPSYLLRLPDEAKAEAYAAFVDD HHHHEEHCCCCCCEEECCCCCCCCCCCCCCEEEEEEECHHHEEECCCHHHHHHHHHHHHH LRRVEALGRELAA HHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: deoxynucleoside triphosphate; DNAn
Specific reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA