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The map label for this gene is rutC

Identifier: 170748000

GI number: 170748000

Start: 1671380

End: 1671766

Strand: Reverse

Name: rutC

Synonym: Mrad2831_1582

Alternate gene names: 170748000

Gene position: 1671766-1671380 (Counterclockwise)

Preceding gene: 170748001

Following gene: 170747999

Centisome position: 27.51

GC content: 70.28

Gene sequence:

>387_bases
ATGCCCAAGCAGGTCGTGATACCGCCGGGAACCGGCAAGCCGCTGGCCCCCTACGTGCCGGGCACGCTGGCCGACGGGGT
CCTGTACGTCTCGGGCACGCTGCCGCTGGACGCGGAGGCCAACGTGGTCCATGTCGGCGACGCGGCGGCCCAGACCCGCC
ACGTGCTGGAGACCATCAAGGGCGTGGTCGAGGCCGCGGGCGGCACGATGGACGACGTCACCTTCAACCACGTCTTCCTG
GCGGACTGGGCCGACTACGCGGCGATCAACGCCGTCTACGCCGAGTATTTCCCGGGCGAGAAGCCCGCGCGCTACTGCAT
CCAGTGCGGCCTCGTGAAGCCCGAGGCCCGCGTGGAGATCGCCGCGATCGCCCATATCGGCCGCTGA

Upstream 100 bases:

>100_bases
CCGGCCGGTGACCGGCAGGGTGCGCGAGGACCGCCGCGACGCGGCCCTCCGCGCGGCCTGCCCGGCCCGGCCGACAGGTC
GAGCGCGGGAGGCGCGGGGA

Downstream 100 bases:

>100_bases
TGGGCCCGCTCCACCACGCTGTGGCGGGCCCGGCGGGCGGTCGGCCGGTGCTGCTCTCGCCGGGGCTCGGCGGCGCGGCG
GGCTACTTCGCGCCGCAGAT

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 127

Protein sequence:

>128_residues
MPKQVVIPPGTGKPLAPYVPGTLADGVLYVSGTLPLDAEANVVHVGDAAAQTRHVLETIKGVVEAAGGTMDDVTFNHVFL
ADWADYAAINAVYAEYFPGEKPARYCIQCGLVKPEARVEIAAIAHIGR

Sequences:

>Translated_128_residues
MPKQVVIPPGTGKPLAPYVPGTLADGVLYVSGTLPLDAEANVVHVGDAAAQTRHVLETIKGVVEAAGGTMDDVTFNHVFL
ADWADYAAINAVYAEYFPGEKPARYCIQCGLVKPEARVEIAAIAHIGR
>Mature_127_residues
PKQVVIPPGTGKPLAPYVPGTLADGVLYVSGTLPLDAEANVVHVGDAAAQTRHVLETIKGVVEAAGGTMDDVTFNHVFLA
DWADYAAINAVYAEYFPGEKPARYCIQCGLVKPEARVEIAAIAHIGR

Specific function: May reduce aminoacrylate peracid to aminoacrylate. Required to remove a toxic intermediate produce by the pyrimidine nitrogen degradation

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family

Homologues:

Organism=Homo sapiens, GI5032215, Length=113, Percent_Identity=30.0884955752212, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787245, Length=128, Percent_Identity=68.75, Blast_Score=194, Evalue=2e-51,
Organism=Escherichia coli, GI87082396, Length=113, Percent_Identity=34.5132743362832, Blast_Score=72, Evalue=8e-15,
Organism=Escherichia coli, GI87082213, Length=113, Percent_Identity=32.7433628318584, Blast_Score=68, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148896, Length=126, Percent_Identity=31.7460317460317, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982075, Length=126, Percent_Identity=31.7460317460317, Blast_Score=63, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI71982068, Length=126, Percent_Identity=31.7460317460317, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320899, Length=100, Percent_Identity=34, Blast_Score=69, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322138, Length=109, Percent_Identity=29.3577981651376, Blast_Score=65, Evalue=2e-12,
Organism=Drosophila melanogaster, GI19921376, Length=125, Percent_Identity=36.8, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUTC_METRJ (B1M5I6)

Other databases:

- EMBL:   CP001001
- RefSeq:   YP_001754260.1
- ProteinModelPortal:   B1M5I6
- SMR:   B1M5I6
- GeneID:   6137610
- GenomeReviews:   CP001001_GR
- KEGG:   mrd:Mrad2831_1582
- HOGENOM:   HBG695954
- OMA:   VYAEYFP
- ProtClustDB:   CLSK879923
- HAMAP:   MF_00831
- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019898
- Gene3D:   G3DSA:3.30.1330.40
- PANTHER:   PTHR11803
- TIGRFAMs:   TIGR03610

Pfam domain/function: PF01042 Ribonuc_L-PSP; SSF55298 YjgF/chorismate_mutase-like

EC number: NA

Molecular weight: Translated: 13500; Mature: 13368

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01094 UPF0076

Important sites: ACT_SITE 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKQVVIPPGTGKPLAPYVPGTLADGVLYVSGTLPLDAEANVVHVGDAAAQTRHVLETIK
CCCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHH
GVVEAAGGTMDDVTFNHVFLADWADYAAINAVYAEYFPGEKPARYCIQCGLVKPEARVEI
HHHHHCCCCCCCCEECEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHEEE
AAIAHIGR
EEEEECCC
>Mature Secondary Structure 
PKQVVIPPGTGKPLAPYVPGTLADGVLYVSGTLPLDAEANVVHVGDAAAQTRHVLETIK
CCCEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEECCHHHHHHHHHHHHH
GVVEAAGGTMDDVTFNHVFLADWADYAAINAVYAEYFPGEKPARYCIQCGLVKPEARVEI
HHHHHCCCCCCCCEECEEEEECCHHHHHHHHHHHHHCCCCCCHHHHHHCCCCCCCHHEEE
AAIAHIGR
EEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA