Click here to switch to the map view.

The map label for this gene is ygbA [H]

Identifier: 170684241

GI number: 170684241

Start: 2932820

End: 2933164

Strand: Reverse

Name: ygbA [H]

Synonym: EcSMS35_2858

Alternate gene names: 170684241

Gene position: 2933164-2932820 (Counterclockwise)

Preceding gene: 170680236

Following gene: 170682463

Centisome position: 57.87

GC content: 51.59

Gene sequence:

>345_bases
ATGTCCGGCAAGCGTATCTCTCGTGAAAAACTGACGATTAAAAAAATGATCGATCTTTATCAAGCGAAATGCCCGCAGGC
GTCAGCGGAGCCGGAGCATTACGACGCGCTGTTTGCCTACGCGCAAAAGCGGCTGGATAAATGTGTGTTCGGCGAAGAGA
AACCAGCCTGTAAGCAGTGTCCGGTGCACTGTTACCAGCCAGCAAAGCGTGAAGAGATGAAACAGATTATGCGTTGGGCC
GGGCCGCGAATGCTGTGGCGTCATCCGATCTTAACCGTGCGTCATCTCATCGATGACAAGCGTCCGGTGCCGGAGTTGCC
AGAAAAATATCGTCCAAAGAAATAA

Upstream 100 bases:

>100_bases
CGCAAAATTGCGTCGGTTGAATAAACCTCCTCCTTCAGAGCCATAGTCCCCTTTCAAATTAAGTTGTAATATAAATACAC
CTTAAGAGTATGGAGGCAGC

Downstream 100 bases:

>100_bases
ATCTGCCGGAGAGCCATACTCTCCGGCAAATAAGGCGTTTACGCTTTGGTGGCAATCAGGATGGCTGATGCTTTGATCAA
TGCAATAACGCGCGAGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYDALFAYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWA
GPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKK

Sequences:

>Translated_114_residues
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYDALFAYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWA
GPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKK
>Mature_113_residues
SGKRISREKLTIKKMIDLYQAKCPQASAEPEHYDALFAYAQKRLDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAG
PRMLWRHPILTVRHLIDDKRPVPELPEKYRPKK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789088, Length=114, Percent_Identity=98.2456140350877, Blast_Score=231, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020483
- ProDom:   PD075772 [H]

Pfam domain/function: PF11756 YgbA_NO [H]

EC number: NA

Molecular weight: Translated: 13535; Mature: 13404

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
8.8 %Cys+Met (Translated Protein)
4.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYDALFAYAQKRLDKCVFGEEKPACKQC
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
PVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKK
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC
>Mature Secondary Structure 
SGKRISREKLTIKKMIDLYQAKCPQASAEPEHYDALFAYAQKRLDKCVFGEEKPACKQC
CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHC
PVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRPVPELPEKYRPKK
CCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1938937; 9278503 [H]