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The map label for this gene is ydiF [H]

Identifier: 170684002

GI number: 170684002

Start: 4776394

End: 4777935

Strand: Reverse

Name: ydiF [H]

Synonym: EcSMS35_4678

Alternate gene names: 170684002

Gene position: 4777935-4776394 (Counterclockwise)

Preceding gene: 170682441

Following gene: 170681538

Centisome position: 94.27

GC content: 52.59

Gene sequence:

>1542_bases
ATGCGTAAGATAACAACCGCCGAGGCACTGGCGGCGCAAATTCAGGACGGTGCGACTATTGCTATTAGCGGTAACGGCGG
CGGTATGGTGGAAGCCGACCATATTCTGGCTGCTATTGAAGCGCGTTTCCTGCAAACCGGACACCCGCGCGATCTGACAT
TAATCCACTCGCTGGGTATTGGCGATCGCGACAGCAAAGGCACTAACCGTTTTGCTCACGCCGAAATGCTCAAACGCATT
ATTGCCGGACATTTTACCTGGTCGCCCAAGATGCAGGAACTGGTGAAAAGCAATGCTATTGAAGCCTACTGTTTCCCTGG
TGGCGTGATTCAGGCGTTGCTACGGGAGATCGGTGCCGGACGTCCGGGGCTTTTTACCCACGTTGGGCTGGGATCGTTTG
TTGATCCACGCAATGGCGGCGGTAAGTCGAATGAATGCACTACCACCGACCTGGTAGAACTGATTGAAATCGATGGTGAA
ACCAAACTTCGTTATCGCCCTTTCAAAGTGGATTACGCGATTTTGCGTGGCACTTATGCCGATCCTCGAGGCAACGTCAG
CCTTGAAGAAGAAGCGATTGATATGGATAGCTATTCCATGGCGCTGGCAGCACACAACAGCGGCGGCAAAGTGTTCGTAC
AGGTACGCGATGTGCTGGAAGCTGGCGCGATTGAACCACGTCGGGTCAAATTACCGGGGATTCTGGTTGATGGCATCGTT
GAGCACCGCGAACAACCGCAAACCTATCTTGGTGGTTACGACCTGACCATTAGCGGTCAACATCGCCGTCTAAGTTCTAA
CGACGCTATTGAACTGGTTAGTCATCCGGTGCGTCGCCTGATTGCCCGTCGGGCAGCACGGGAACTGGTGGCAGGCGCTT
CAACCAACTTTGGCTTTGGTATTCCGGGCGGTATTCCAGGCGTAGCGCTGCGCGAAGGCGTGCCTTATCAAAGTTTGTGG
CTGAGTGTAGAACAGGGTGTACATAACGGCATGATGCTGGATGATGCTCTGTTCGGCTGCGCCCGTAACGCCGATGCCAT
TATTCCATCACTCGATCAATTCGAATTCTACAGTGGCGGAGGGATCGATATCACCTTCCTCGGCATGGGAGAGATGGATC
AGTACGGTAACGTCAACGTCTCCCATCTCAATGGCAATCTGATTGGCCCCGGCGGATTTCTCGAAATTGCGCAAAACGCC
CGTAAAGTGGTGTTCTGCGGCACGTTCGACGCCAAAGGTAGCAAGATTGATGTAACGCCAGATGGCTTGCATATCGCCCA
GTCAGGTCAAATCCCTAAACTGGTTACCCAGGTGGAAAAAATCACTTTTAGCGCCGCCTACGCACAGCAAAGTGGTCAGG
AAGTGTTGTATATCACTGAACGTGCAGTATTCCAGTTAACGGCAGAAGGCGTTGAATTAATTGAAATCGCACCAGGTGTG
GAGATTGAGCGCGACATTCTGCCGTATATGGCCTTCCGTCCAATTATCAATCAGCCACGCCTGATGGAAAGTAGCCTGTT
TACGCCGATGGAGGATGCATGA

Upstream 100 bases:

>100_bases
ACTGGCCGGATTAATGTCCGCCACTCAGGATTGCCAGCAGGCGACGCGCGCCTTTGCCGAAAAAAGTAGCGTGAGCTTCC
ATAATCAATAAGGAAATTGT

Downstream 100 bases:

>100_bases
GCCAGCTTGATGACACCCTCCTTGATGCGCTCACACACGTCACTTTTCCAAAGGGTTTTGTGTCAGCAGAGCCAGCGTCA
ATTGTCACCGTTGAGGATGT

Product: CoA-transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 513; Mature: 513

Protein sequence:

>513_residues
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDSKGTNRFAHAEMLKRI
IAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAGRPGLFTHVGLGSFVDPRNGGGKSNECTTTDLVELIEIDGE
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGIPGVALREGVPYQSLW
LSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDVTPDGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIINQPRLMESSLFTPMEDA

Sequences:

>Translated_513_residues
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDSKGTNRFAHAEMLKRI
IAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAGRPGLFTHVGLGSFVDPRNGGGKSNECTTTDLVELIEIDGE
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGIPGVALREGVPYQSLW
LSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDVTPDGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIINQPRLMESSLFTPMEDA
>Mature_513_residues
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGIGDRDSKGTNRFAHAEMLKRI
IAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAGRPGLFTHVGLGSFVDPRNGGGKSNECTTTDLVELIEIDGE
TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFGIPGGIPGVALREGVPYQSLW
LSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNA
RKVVFCGTFDAKGSKIDVTPDGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
EIERDILPYMAFRPIINQPRLMESSLFTPMEDA

Specific function: Unknown

COG id: COG4670

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae AtoD [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=492, Percent_Identity=23.780487804878, Blast_Score=89, Evalue=9e-18,
Organism=Homo sapiens, GI11545841, Length=416, Percent_Identity=25.7211538461538, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1787985, Length=508, Percent_Identity=39.5669291338583, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1788551, Length=249, Percent_Identity=26.1044176706827, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014388
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: NA

Molecular weight: Translated: 55502; Mature: 55502

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
CCCCCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCC
GDRDSKGTNRFAHAEMLKRIIAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAG
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCC
RPGLFTHVGLGSFVDPRNGGGKSNECTTTDLVELIEIDGETKLRYRPFKVDYAILRGTYA
CCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEEEEEEEECCCC
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
CCCCCCEEHHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCCCCCEEECCCCHHHHHH
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
HHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IPGGIPGVALREGVPYQSLWLSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGG
CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCEEEECCC
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDVTP
CEEEEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHCCCCEEEEEEEECCCCCEEECCC
DGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCEEEEEECCCC
EIERDILPYMAFRPIINQPRLMESSLFTPMEDA
EEHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC
>Mature Secondary Structure
MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFLQTGHPRDLTLIHSLGI
CCCCCHHHHHHHHHCCCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCCCEEEEEECCC
GDRDSKGTNRFAHAEMLKRIIAGHFTWSPKMQELVKSNAIEAYCFPGGVIQALLREIGAG
CCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCEEEEECCCHHHHHHHHHHCCC
RPGLFTHVGLGSFVDPRNGGGKSNECTTTDLVELIEIDGETKLRYRPFKVDYAILRGTYA
CCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECEEEEEEEEECCCC
DPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDVLEAGAIEPRRVKLPGILVDGIV
CCCCCCEEHHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCCCCCEEECCCCHHHHHH
EHREQPQTYLGGYDLTISGQHRRLSSNDAIELVSHPVRRLIARRAARELVAGASTNFGFG
HHCCCCCHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
IPGGIPGVALREGVPYQSLWLSVEQGVHNGMMLDDALFGCARNADAIIPSLDQFEFYSGG
CCCCCCCHHHHCCCCHHHHHHHHHHCCCCCEEHHHHHHHHCCCCCCCCCCCCCEEEECCC
GIDITFLGMGEMDQYGNVNVSHLNGNLIGPGGFLEIAQNARKVVFCGTFDAKGSKIDVTP
CEEEEEEECCCCCCCCCEEEEEECCCEECCCHHHHHHCCCCEEEEEEEECCCCCEEECCC
DGLHIAQSGQIPKLVTQVEKITFSAAYAQQSGQEVLYITERAVFQLTAEGVELIEIAPGV
CCEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEECCCEEEEEECCCC
EIERDILPYMAFRPIINQPRLMESSLFTPMEDA
EEHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 3541912; 7984428 [H]