Click here to switch to the map view.

The map label for this gene is yobB [H]

Identifier: 170683686

GI number: 170683686

Start: 1333997

End: 1334653

Strand: Reverse

Name: yobB [H]

Synonym: EcSMS35_1344

Alternate gene names: 170683686

Gene position: 1334653-1333997 (Counterclockwise)

Preceding gene: 170680257

Following gene: 170681411

Centisome position: 26.33

GC content: 51.9

Gene sequence:

>657_bases
ATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGA
GTTTGTGAGGGCCGCCGCCAGGCAACAATGTCAGCTGTTAGTTTTTCCATCGCTTTCTTTACTGGGGTGTGATTATTCGC
GACGTGCCCTTCCTGCCCCCCCCGATCTCTCGCTATTAGACCCGCTTTGTTATGCTGCAACGACCTGGCGAATGACTATC
ATTGCCGGCCTTCCCGTTGAATATAACGATCGCTTTATTCGTGGAATTGCGGTGTTCGCACCGTGGCGAAAAACGCCAGG
GATCTACCATCAGAGTTATGGTGCATGTCTGGGCCGTCGTTCCAGAACCATCACGGTGGTCGATGAACAACCGGAAGGTA
TGGATATGGACCCGACCTGTTCACTGTTTACGACAGGGCAATGTCTGGGAGAACCCGACCTGCTGGCGTCGGCCCGTCGC
TTACAATTTTTTTCACATCAGTACTCGATTGCTGTGCTGATGGCAAATGCCCGTGGTAACAGTGCACTATGGGATGAACA
TGGTCGTCTCATCGTTCGCGCCGATCGTGGTTCATTATTGTTAGTCGGTCAGCGTTCATCACAGGGTTGGCAAGGCGATA
TCATTCCATTACGCTAG

Upstream 100 bases:

>100_bases
ACTTATACATAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACCCATAATTTGCAGTC
ATTTTGAAAAGGAAGTCATT

Downstream 100 bases:

>100_bases
GCTTTTTCGGCCTGGAGCATGCCATGTTGCGCATTATCGATACAGAAACCTGCGGTTTGCAGGGAGGGATCGTTGAGATT
GCCTCTGTTGATGTCATTGA

Product: carbon-nitrogen family hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 217

Protein sequence:

>218_residues
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTI
IAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSYGACLGRRSRTITVVDEQPEGMDMDPTCSLFTTGQCLGEPDLLASARR
LQFFSHQYSIAVLMANARGNSALWDEHGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR

Sequences:

>Translated_218_residues
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTI
IAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSYGACLGRRSRTITVVDEQPEGMDMDPTCSLFTTGQCLGEPDLLASARR
LQFFSHQYSIAVLMANARGNSALWDEHGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
>Mature_217_residues
SFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTII
AGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSYGACLGRRSRTITVVDEQPEGMDMDPTCSLFTTGQCLGEPDLLASARRL
QFFSHQYSIAVLMANARGNSALWDEHGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR

Specific function: Unknown

COG id: COG0388

COG function: function code R; Predicted amidohydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788148, Length=218, Percent_Identity=98.6238532110092, Blast_Score=444, Evalue=1e-126,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003010 [H]

Pfam domain/function: PF00795 CN_hydrolase [H]

EC number: NA

Molecular weight: Translated: 24396; Mature: 24265

Theoretical pI: Translated: 8.59; Mature: 8.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP
CCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEECCCCCCCCCCCC
PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSYGACLGRR
CCCHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCC
SRTITVVDEQPEGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN
CCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
SALWDEHGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
CCEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEECC
>Mature Secondary Structure 
SFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPSLSLLGCDYSRRALPAP
CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCEECCCCCCCCCCCC
PDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPWRKTPGIYHQSYGACLGRR
CCCHHHHHHHHHHHHEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCC
SRTITVVDEQPEGMDMDPTCSLFTTGQCLGEPDLLASARRLQFFSHQYSIAVLMANARGN
CCEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCC
SALWDEHGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
CCEECCCCCEEEEECCCCEEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]