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The map label for this gene is ybjS [H]

Identifier: 170682810

GI number: 170682810

Start: 900639

End: 901688

Strand: Reverse

Name: ybjS [H]

Synonym: EcSMS35_0896

Alternate gene names: 170682810

Gene position: 901688-900639 (Counterclockwise)

Preceding gene: 170681016

Following gene: 170682941

Centisome position: 17.79

GC content: 53.9

Gene sequence:

>1050_bases
ATGCGCACGTCATTTTCTCAACAACAGTGGATTGATATGAAGGTACTGGTTACCGGCGCCACCAGCGGCTTAGGTCGAAA
CGCGGTAGAGTTTTTATGCCAGAAAGGCATCAGCGTGCGTGCGACCGGTCGCAACGAGGCAATGGGTAAATTGCTGGAAA
AAATGGGCGCAGAGTTTGTTCCGGCGGATCTGACCGAGCTGGTCTCATCACAAGCTAAAGTGATGCTCGCAGGCATTGAT
ACGCTGTGGCACTGCTCCAGCTTTACCTCGCCCTGGGGGACACAACAGGCTTTCGATCTGGCTAACGTTCGCGCCACTCG
CCGCCTGGGTGAATGGGCTGTCGCCTGGGGTGTGCGTAACTTTATTCATATCTCTTCCCCCTCCCTGTACTTCGATTATC
ACCACCATCGCGATATTAAAGAAGATTTTCGCCCTCACCGCTTCGCCAACGAGTTTGCCCGTAGCAAAGCAGCCAGCGAA
GAAGTGATCAATATGCTTTCGCAGGCGAATCCACAAACGCGCTTTACTATTCTGCGCCCACAAAGTCTGTTCGGACCGCA
CGATAAAGTCTTTATCCCCCGTCTGGCGCATATGATGCACCACTACGGCAGCATTCTGTTACCGCACGGCGGCAGTGCGC
TGGTCGATATGACCTACTATGAAAATGCCGTGCACGCCATGTGGCTGGCAAGCCAGGAAGCCTGCGATAAGCTACCTTCC
GGGCGTGTGTACAACATCACCAACGGCGAGCATCGCACACTGCGCAGCATCGTGCAGAAGCTGATCGATGAGTTGAATAT
TGACTGTCGTATTCGTTCGGTTCCTTACCCGATGCTGGATATGATCGCCCGCAGCATGGAGCGTTTAGGCCGCAAGTCAG
CAAAAGAGCCGCCGCTGACCCACTACGGCGTCTCCAAGTTGAATTTTGACTTTACGCTGGATATTACGCGTGCGCAGGAA
GAGTTAGGTTATCAACCAGTCCTCACCCTGGATGAAGGTATCGAGAAAACTGCCGCCTGGCTACGCGACCACGGAAAACT
GCCGCGCTAA

Upstream 100 bases:

>100_bases
AACGAATCGCCAGACTGGCAGAACAAAGCACAGATTAATCGACAAAACCTGCGTTATTCTTTCATGTTTCCCATTGCATC
ATAGGGGAAATCACGGAAGA

Downstream 100 bases:

>100_bases
TCCTGCCCGTATTTCTCCAGCAACGCTTCGGCAATCGCCTGAGTTTCTGCATCCGCTTCGCCGTTGTATAACGTCGGGCG
GAAATGCATCTGGAACGCCA

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID
TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE
EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE
ELGYQPVLTLDEGIEKTAAWLRDHGKLPR

Sequences:

>Translated_349_residues
MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID
TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE
EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE
ELGYQPVLTLDEGIEKTAAWLRDHGKLPR
>Mature_349_residues
MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFVPADLTELVSSQAKVMLAGID
TLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASE
EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLTHYGVSKLNFDFTLDITRAQE
ELGYQPVLTLDEGIEKTAAWLRDHGKLPR

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=338, Percent_Identity=23.9644970414201, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI8393516, Length=338, Percent_Identity=23.9644970414201, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI239745448, Length=332, Percent_Identity=24.3975903614458, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI310132178, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI310113012, Length=332, Percent_Identity=24.3975903614458, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87081792, Length=337, Percent_Identity=99.7032640949555, Blast_Score=706, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570557, Length=233, Percent_Identity=27.4678111587983, Blast_Score=75, Evalue=5e-14,
Organism=Saccharomyces cerevisiae, GI6321437, Length=294, Percent_Identity=25.5102040816327, Blast_Score=83, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 39595; Mature: 39595

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV
CCCCCCCHHCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCC
PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN
CHHHHHHHHHHHEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP
EEEECCCCEEEECHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
HHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCC
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT
CCEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
HYGVSKLNFDFTLDITRAQEELGYQPVLTLDEGIEKTAAWLRDHGKLPR
CCCHHHCCCEEEEEEEHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMGAEFV
CCCCCCCHHCCEEEEEEEECCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCC
PADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAVAWGVRN
CHHHHHHHHHHHEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
FIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMLSQANPQTRFTILRP
EEEECCCCEEEECHHCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
QSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLASQEACDKLPS
HHHCCCCCHHHHHHHHHHHHHHCCEEEECCCCEEEEEHHHHHHHHHHHHHCHHHHHCCCC
GRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPYPMLDMIARSMERLGRKSAKEPPLT
CCEEECCCCHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCC
HYGVSKLNFDFTLDITRAQEELGYQPVLTLDEGIEKTAAWLRDHGKLPR
CCCHHHCCCEEEEEEEHHHHHCCCCCEEEHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]