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The map label for this gene is ymbA [H]

Identifier: 170682434

GI number: 170682434

Start: 2172135

End: 2172698

Strand: Reverse

Name: ymbA [H]

Synonym: EcSMS35_2167

Alternate gene names: 170682434

Gene position: 2172698-2172135 (Counterclockwise)

Preceding gene: 170683101

Following gene: 170681213

Centisome position: 42.87

GC content: 51.95

Gene sequence:

>564_bases
ATGAAAAAGTGGCTAGTGACGATTGCAGCACTGTGGCTGGCCGGATGCAGCTCCGGCGAAATTAATAAAAACTATTACCA
GTTACCTGTGGTGCAGGGCGGTACACAAAGTACCGCCAGCCAGGGTAATCGCCTGTTATGGGTAGAGCAGGTCGCTGTTC
CTGACTATCTGGCGGGAAATGGTGTGGTTTATCAAACCAGTGATGTGAAGTATGTGATTGCCAACAACAACTTGTGGGCC
AGCCCGTTGGATCAACAGTTGCGCAACACTCTGGTTGCCAACCTGAGCACGCAACTGCCCGGCTGGGTGGTTGCCTCCCA
GCCTCTGGGAAGCGCCCAGGATACGCTCAATGTTACCGTAACGGAGTTTAACGGGCGATATGATGGCAAGGTCATTGTCA
GTGGTGAATGGCTGTTGAACCACCAGGGACAACTGATCAAACGTCCGTTCCGTCTGGAAGGGGTGCAAACTCAGGATGGT
TACGATGAGATGGTTAAAGTACTGGCCAGTGTCTGGAGTCAGGAAGCCGCTTCTATTGCGCAAGAGATAAAGCGTCTACC
TTAA

Upstream 100 bases:

>100_bases
GAGAACTGCAACCGGTGCTGAAAACGCTCAACGAGAAGAGTAACGCGCTGGTATTTGAAGCGAAGGACAAAAAAGATCCA
GAGCCGAAGAGGGCGAAACA

Downstream 100 bases:

>100_bases
TTATAAAGATTTGTAAATATAACCGCCTCCGGTATGTTGCCTGAGGCGGTTTTTTTGTCTCTAACGTGCGGAAAAAGTTG
TTCCTCTTCACATTTTTTGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQGGTQSTASQGNRLLWVEQVAVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLASVWSQEAASIAQEIKRLP

Sequences:

>Translated_187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQGGTQSTASQGNRLLWVEQVAVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLASVWSQEAASIAQEIKRLP
>Mature_187_residues
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQGGTQSTASQGNRLLWVEQVAVPDYLAGNGVVYQTSDVKYVIANNNLWA
SPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
YDEMVKVLASVWSQEAASIAQEIKRLP

Specific function: Unknown

COG id: COG3009

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693109, Length=187, Percent_Identity=98.3957219251337, Blast_Score=372, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005586 [H]

Pfam domain/function: PF03886 DUF330 [H]

EC number: NA

Molecular weight: Translated: 20605; Mature: 20605

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQGGTQSTASQGNRLLWVEQVAVPDYLAGN
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHCCCEEEEEEEECCCCEECCC
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTV
CEEEEECCEEEEEECCCEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLASVWSQEAASIA
EEECCCCCCEEEEECCEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
QEIKRLP
HHHHCCC
>Mature Secondary Structure
MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQGGTQSTASQGNRLLWVEQVAVPDYLAGN
CCHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHCCCEEEEEEEECCCCEECCC
GVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGWVVASQPLGSAQDTLNVTV
CEEEEECCEEEEEECCCEECCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEEE
TEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDGYDEMVKVLASVWSQEAASIA
EEECCCCCCEEEEECCEEECCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
QEIKRLP
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]