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The map label for this gene is hofM [H]

Identifier: 170680610

GI number: 170680610

Start: 3728761

End: 3729540

Strand: Reverse

Name: hofM [H]

Synonym: EcSMS35_3672

Alternate gene names: 170680610

Gene position: 3729540-3728761 (Counterclockwise)

Preceding gene: 170680526

Following gene: 170683225

Centisome position: 73.58

GC content: 57.95

Gene sequence:

>780_bases
ATGGCATTTAAGATCTGGCAAATTGGTTTGCATTTACAACAGCAAGAAGCGGTAGCGGTTGCGATCGTGCGGGGCGCAAA
AGAATGCTTTTTGCAACGCTGGTGGCGGTTGCCGCTGGAGAATGACATTATCAAAGATGGGCGGATTGTTGATGCGCAGC
GGCTGGCTAACACGTTGTTACCGTGGAGCCGCGAACTGCCGCAGCGTCATCACATTATGTTGGCGTTTCCCGCCAGTCGC
ACATTACAGCGGTCATTTCCGCGCCCGTCGATGTCCCTTGGTGAGCGGGAGCAAACGGCCTGGCTGTCCGGGACGATGGC
CCGTGAACTGGATATGGATCCGGACTCCCTGCGCTTCGATTACAGCGAAGACTCACTCAGTCCCGCCTATAACGTGACTG
CCGCGCAAAGCAAAGAGCTGGCAACGCTGCTTACTCTGGCAGAAAGGTTGCGTGTTCATGTTAGCGCGATCACCCCGGAT
GCCAGTGCATTACAGCGATTCCTGCCTTTTTTACCTTCTCATCAGCAATGTCTGGCCTGGCGTGATAACGAACAGTGGCT
GTGGGCGACGCGCTATCGCTGGGGGCGCAAACTGGCGGTGGGGATGACTAGCGCGAAGGAGCTGGCGGCAGCGTTATCCG
TTGATCCCGAAAGCGTCGCGCTATGTGGCGAAGGCGGATTTGATCCCTGGGAGGCCGTTTCTGTTCGTCAGCCGCCGCTA
CCGCCGCCAGGTGGAGACTTTGCCATCGCGCTGGGGCTGGCGCTAGGGAAGGCGAACTGA

Upstream 100 bases:

>100_bases
TTCATTTGGGCAGTTTATAAACAAACGCGCGGTAGTATAAAGGCAAGCCAGACGCATTGATATACCCGTCAGAGTGACGG
GTGATAAGGAGATCATCACA

Downstream 100 bases:

>100_bases
TGAACCCGCCAATTAATTTTTTGCCCTGGCGACAGCAACGCCGGACCGCTTTTCTGCGTTTCTGGTTGCTGATGTTCGTT
GCGCCTCTGCTGCTGGCCGT

Product: HofM protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 259; Mature: 258

Protein sequence:

>259_residues
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQRLANTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKAN

Sequences:

>Translated_259_residues
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQRLANTLLPWSRELPQRHHIMLAFPASR
TLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
PPPGGDFAIALGLALGKAN
>Mature_258_residues
AFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQRLANTLLPWSRELPQRHHIMLAFPASRT
LQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDA
SALQRFLPFLPSHQQCLAWRDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPLP
PPGGDFAIALGLALGKAN

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082257, Length=258, Percent_Identity=98.4496124031008, Blast_Score=517, Evalue=1e-148,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29035; Mature: 28903

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQRLANTLL
CCEEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
CCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCCCEEEC
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
CCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
ECCCCEEEEEHHCCCCEEEEECCHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCC
PPPGGDFAIALGLALGKAN
CCCCCCCEEEEEEHHCCCC
>Mature Secondary Structure 
AFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDIIKDGRIVDAQRLANTLL
CEEEEEECCEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECHHHHHHHHC
PWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWLSGTMARELDMDPDSLRFD
CCCCCCCCCCEEEEEECCCHHHHHHCCCCCCCCCCCHHHHHHHCHHHHHCCCCCCCEEEC
YSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPDASALQRFLPFLPSHQQCLAW
CCCCCCCCCEEECHHCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHCCCCCCHHEEE
RDNEQWLWATRYRWGRKLAVGMTSAKELAAALSVDPESVALCGEGGFDPWEAVSVRQPPL
ECCCCEEEEEHHCCCCEEEEECCHHHHHHHHHCCCHHHEEEECCCCCCHHHCCCCCCCCC
PPPGGDFAIALGLALGKAN
CCCCCCCEEEEEEHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]