| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170079239
Identifier: 170079239
GI number: 170079239
Start: 2779925
End: 2780737
Strand: Reverse
Name: 170079239
Synonym: SYNPCC7002_A2645
Alternate gene names: NA
Gene position: 2780737-2779925 (Counterclockwise)
Preceding gene: 170079245
Following gene: 170079237
Centisome position: 92.44
GC content: 52.64
Gene sequence:
>813_bases TTGGATAAGCCCGTGTCTGAATCTAACCATCATCTATCGTCTCCACCAGCGCCGAATCCCCATGAGGACCAGACGACCTC CCAAAAACTACGGCAACATCCCATTCCCCCCGCGAGCCATCCCCGTCAATATCGGGCCATTGGCATTGTGCGCGGCAAAT ATACCCCCGAAGATCCAGAGCAAATTAGTAAGGGGGCGATCGCCACAGCAGATGGCACCATCGAAGCCGTTTTATTAGGT CGTGTGATTAGCCTGATCAAAAATCACATTGACCTCAACCAAGAGCACGTTTGGGTCGTCTATCCCCGCACCCGCCAGGA TGATAACCATCTCCACCTCCAGATTCTCGGCATTTGGGAGCCCGAAAACCTTGATGATCCAGAGGCCCTCACGGAGTCTA TTCCCACCAGTGACCAAGTCGAAGACGGCTATTTTTCCATTCGCGGCCAGGTGGTTTTCTATGATGCCGAATCCAAAAAA GTCATCGTTAAAATTCGCCAATCCCCGAAGAAGCAAGGGGACAAGCCCAAGTTTTTCAAGATTCAACTGATCGGTGCTCT GCCGGATCGCCCCGTTAACCATTTCTACGATCTCCAGGCGAAGCTCCTCGATAATATGCTGATGATTCAAACCTGCGAAG ATATTGGCTATATCAGCAGTCGTCGCAAAGGCCCCAAGCCAGGCGGAAAACCCTTTAACCGCGACAAGAGCAAGCCCAGA CCCATCGCCGATCATCACGCCAGTGATAGCCATGGGGCAACTGCTAGAGCGAGACCGGTGCCCCGACCCAAACCAAAGGA TAGTGAGGGCTAA
Upstream 100 bases:
>100_bases TATCGTGATGGCGATCGCCTACCGATGATGTTGATGTCTGATAGTTGACTATCTGGTATCGAAAACGATCTGTATTTTTT GTTAGCCCACCTAGAAAGCA
Downstream 100 bases:
>100_bases ATCACGGTCGTTTTTAGGCTAACTTCCAGTTTCCCCCTTTGATGAAGAGAAGTCATTGGGGGTTCTTTGTTGGCTGAGTT TGGCTAGGGTATCAAAGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 270; Mature: 270
Protein sequence:
>270_residues MDKPVSESNHHLSSPPAPNPHEDQTTSQKLRQHPIPPASHPRQYRAIGIVRGKYTPEDPEQISKGAIATADGTIEAVLLG RVISLIKNHIDLNQEHVWVVYPRTRQDDNHLHLQILGIWEPENLDDPEALTESIPTSDQVEDGYFSIRGQVVFYDAESKK VIVKIRQSPKKQGDKPKFFKIQLIGALPDRPVNHFYDLQAKLLDNMLMIQTCEDIGYISSRRKGPKPGGKPFNRDKSKPR PIADHHASDSHGATARARPVPRPKPKDSEG
Sequences:
>Translated_270_residues MDKPVSESNHHLSSPPAPNPHEDQTTSQKLRQHPIPPASHPRQYRAIGIVRGKYTPEDPEQISKGAIATADGTIEAVLLG RVISLIKNHIDLNQEHVWVVYPRTRQDDNHLHLQILGIWEPENLDDPEALTESIPTSDQVEDGYFSIRGQVVFYDAESKK VIVKIRQSPKKQGDKPKFFKIQLIGALPDRPVNHFYDLQAKLLDNMLMIQTCEDIGYISSRRKGPKPGGKPFNRDKSKPR PIADHHASDSHGATARARPVPRPKPKDSEG >Mature_270_residues MDKPVSESNHHLSSPPAPNPHEDQTTSQKLRQHPIPPASHPRQYRAIGIVRGKYTPEDPEQISKGAIATADGTIEAVLLG RVISLIKNHIDLNQEHVWVVYPRTRQDDNHLHLQILGIWEPENLDDPEALTESIPTSDQVEDGYFSIRGQVVFYDAESKK VIVKIRQSPKKQGDKPKFFKIQLIGALPDRPVNHFYDLQAKLLDNMLMIQTCEDIGYISSRRKGPKPGGKPFNRDKSKPR PIADHHASDSHGATARARPVPRPKPKDSEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30339; Mature: 30339
Theoretical pI: Translated: 9.22; Mature: 9.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDKPVSESNHHLSSPPAPNPHEDQTTSQKLRQHPIPPASHPRQYRAIGIVRGKYTPEDPE CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHH QISKGAIATADGTIEAVLLGRVISLIKNHIDLNQEHVWVVYPRTRQDDNHLHLQILGIWE HHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEEEC PENLDDPEALTESIPTSDQVEDGYFSIRGQVVFYDAESKKVIVKIRQSPKKQGDKPKFFK CCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCHHHCCCCCCEEE IQLIGALPDRPVNHFYDLQAKLLDNMLMIQTCEDIGYISSRRKGPKPGGKPFNRDKSKPR EEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PIADHHASDSHGATARARPVPRPKPKDSEG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MDKPVSESNHHLSSPPAPNPHEDQTTSQKLRQHPIPPASHPRQYRAIGIVRGKYTPEDPE CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHH QISKGAIATADGTIEAVLLGRVISLIKNHIDLNQEHVWVVYPRTRQDDNHLHLQILGIWE HHHCCCEEECCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEEEC PENLDDPEALTESIPTSDQVEDGYFSIRGQVVFYDAESKKVIVKIRQSPKKQGDKPKFFK CCCCCCHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEEEEEEECCHHHCCCCCCEEE IQLIGALPDRPVNHFYDLQAKLLDNMLMIQTCEDIGYISSRRKGPKPGGKPFNRDKSKPR EEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC PIADHHASDSHGATARARPVPRPKPKDSEG CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA