| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is hox1 [H]
Identifier: 170079103
GI number: 170079103
Start: 2615092
End: 2615814
Strand: Direct
Name: hox1 [H]
Synonym: SYNPCC7002_A2508
Alternate gene names: 170079103
Gene position: 2615092-2615814 (Clockwise)
Preceding gene: 170079102
Following gene: 170079106
Centisome position: 86.94
GC content: 49.65
Gene sequence:
>723_bases ATGGTCGCTAACCTAGCAACAATGTTGAGAGAGGGAACGAAAACTTCCCACACGATGGCGGAAAACGTTGGCTTCGTGAA ATGCTTCCTGAAGGGAGTCGTGGAGAAAAAATCCTACCGGAAGCTTGTGGCAGACCTTTACTATGTTTACTCAGCGATGG AAGAGGAGATGGAGCGCCTCAAGGATCATCCCGTCGTCTCCCAAATTTATTTCCCTGAGTTAAACCGTAAACAAAGTCTC GAAACGGATCTACGCTATTATTTTGGCCCCAATTGGCAAGCCGAAGCAAAAATTACTCCCGCTGGTCAGGCTTATGTGGA TCGCATCCATGAAGTGGCCCAGACCGCACCGGAACTCTTAGTCAGCCATTCCTACACCCGCTACCTGGGCGATCTCTCTG GGGGACAAATCCTCAAGAAAATTGCCCAAAATGCGATGAACCTCGACGGCGAAGGGACGGCCTTCTATGAGTTTGAGAAT ATCTCTGATGAAAAGGCCTTTAAAGACAAGTACCGGGCGGCAATGAACAGCTTGGATGTGCCGGAAGAAACGGCAGAGCA AATTGTCCAGGAAGCCAATGATGCCTTTGGCATGAATATGAATATGTTCAAGGAGCTAGAAGGAAACCTCGTTAAGGCCA TCGGTGTGATGCTTTTCAATACCTTGACCCGTCGCCGCACCAAGGGCAGCACCGACGCTGATCTATCTCCGGCGAGCAAC TAA
Upstream 100 bases:
>100_bases GTTAACCTACGAAACTGAGCAGTCTTTTAATTTTGTTAACTTTCTTTAACAAACCTTTTAATATCTATTCATTTTCAGTA AGAACAAGGGACTTATTTCT
Downstream 100 bases:
>100_bases CAAGTTTCGTCTAAACCTCAAACAATGAATTCCTCAGTCGCGGTTGTGATTGGGGAATTTTTTTAGCTATGGGTTTTGGG AAGCGGGAGGATTGTTCTCT
Product: heme oxygenase (decyclizing)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 240; Mature: 240
Protein sequence:
>240_residues MVANLATMLREGTKTSHTMAENVGFVKCFLKGVVEKKSYRKLVADLYYVYSAMEEEMERLKDHPVVSQIYFPELNRKQSL ETDLRYYFGPNWQAEAKITPAGQAYVDRIHEVAQTAPELLVSHSYTRYLGDLSGGQILKKIAQNAMNLDGEGTAFYEFEN ISDEKAFKDKYRAAMNSLDVPEETAEQIVQEANDAFGMNMNMFKELEGNLVKAIGVMLFNTLTRRRTKGSTDADLSPASN
Sequences:
>Translated_240_residues MVANLATMLREGTKTSHTMAENVGFVKCFLKGVVEKKSYRKLVADLYYVYSAMEEEMERLKDHPVVSQIYFPELNRKQSL ETDLRYYFGPNWQAEAKITPAGQAYVDRIHEVAQTAPELLVSHSYTRYLGDLSGGQILKKIAQNAMNLDGEGTAFYEFEN ISDEKAFKDKYRAAMNSLDVPEETAEQIVQEANDAFGMNMNMFKELEGNLVKAIGVMLFNTLTRRRTKGSTDADLSPASN >Mature_240_residues MVANLATMLREGTKTSHTMAENVGFVKCFLKGVVEKKSYRKLVADLYYVYSAMEEEMERLKDHPVVSQIYFPELNRKQSL ETDLRYYFGPNWQAEAKITPAGQAYVDRIHEVAQTAPELLVSHSYTRYLGDLSGGQILKKIAQNAMNLDGEGTAFYEFEN ISDEKAFKDKYRAAMNSLDVPEETAEQIVQEANDAFGMNMNMFKELEGNLVKAIGVMLFNTLTRRRTKGSTDADLSPASN
Specific function: Catalyzes the opening of the heme ring with the release of iron. Key enzyme in the synthesis of the chromophoric part of the photosynthetic antennae [H]
COG id: COG5398
COG function: function code P; Heme oxygenase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme oxygenase family [H]
Homologues:
Organism=Homo sapiens, GI187761311, Length=209, Percent_Identity=53.5885167464115, Blast_Score=235, Evalue=3e-62, Organism=Homo sapiens, GI187761309, Length=209, Percent_Identity=53.5885167464115, Blast_Score=235, Evalue=3e-62, Organism=Homo sapiens, GI187761307, Length=209, Percent_Identity=53.5885167464115, Blast_Score=235, Evalue=3e-62, Organism=Homo sapiens, GI8051608, Length=209, Percent_Identity=53.5885167464115, Blast_Score=235, Evalue=3e-62, Organism=Homo sapiens, GI4504437, Length=210, Percent_Identity=50, Blast_Score=221, Evalue=4e-58,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002051 - InterPro: IPR016053 - InterPro: IPR016084 - InterPro: IPR018207 [H]
Pfam domain/function: PF01126 Heme_oxygenase [H]
EC number: =1.14.99.3 [H]
Molecular weight: Translated: 27127; Mature: 27127
Theoretical pI: Translated: 5.20; Mature: 5.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVANLATMLREGTKTSHTMAENVGFVKCFLKGVVEKKSYRKLVADLYYVYSAMEEEMERL CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDHPVVSQIYFPELNRKQSLETDLRYYFGPNWQAEAKITPAGQAYVDRIHEVAQTAPELL HCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHH VSHSYTRYLGDLSGGQILKKIAQNAMNLDGEGTAFYEFENISDEKAFKDKYRAAMNSLDV HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC PEETAEQIVQEANDAFGMNMNMFKELEGNLVKAIGVMLFNTLTRRRTKGSTDADLSPASN CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC >Mature Secondary Structure MVANLATMLREGTKTSHTMAENVGFVKCFLKGVVEKKSYRKLVADLYYVYSAMEEEMERL CCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KDHPVVSQIYFPELNRKQSLETDLRYYFGPNWQAEAKITPAGQAYVDRIHEVAQTAPELL HCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHH VSHSYTRYLGDLSGGQILKKIAQNAMNLDGEGTAFYEFENISDEKAFKDKYRAAMNSLDV HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCC PEETAEQIVQEANDAFGMNMNMFKELEGNLVKAIGVMLFNTLTRRRTKGSTDADLSPASN CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]