| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170079041
Identifier: 170079041
GI number: 170079041
Start: 2539867
End: 2541534
Strand: Reverse
Name: 170079041
Synonym: SYNPCC7002_A2446
Alternate gene names: NA
Gene position: 2541534-2539867 (Counterclockwise)
Preceding gene: 170079042
Following gene: 170079040
Centisome position: 84.49
GC content: 50.12
Gene sequence:
>1668_bases ATGACCACCGAACACCCCCTTGGCTCCGTAATTCAAGGTTCCCTCAGCCAAGGCCTCGAAGTCCGTCTCCATGGCGATGT GTCCGTCGAAGAAATGCGCGTCGGTAAATTTCTCGTCGTCAAAGGGAGCCGCTCCCAATTTTTCTGTCTTCTCACCGATG TTTCCCTGGGCACCTCTAGCCCCCGCATCCTCGCCGATCCACCCAATCCCAACGACGATTTCCTCCAAGCCGTCCTTGCC GGAACCAGCACCTATGGCACCGTCGAACTCGCACCGATGCTGATGTTTACCCCCAGCCAAGCAGAAGAGCATGAAACAGA AAACTTTGAGACCCTTGAGCTACTGCCCGTAAAAACGATCCCTAGTCACTTCAGTCAAGTTTACGAAGCCAACGAACAAG ACTTTCGGCGAGTATTTGGTTGGGAGGACGATCCCCACCACAAAAAATTTGCCATTGGCCGTCCCCTTGATATGGATGTG CCCATTTGCCTCGACCTTGACCGCTTTGTGGAACGAAGTAACGGCATTTTTGGTAAGTCTGGCACCGGCAAATCCTTCCT AACCCGTTTATTGCTGTCTGGAATTATCAAGCGACGGGCCGCCGTAAACCTGATGTTTGATATGCATTCTGAATACGGTT GGGAAGCGATTGAAGAGGGCAAAGGCGTCAGTACCGTTAAAGGTCTCCGGCAGCTTTTCCCCGGTCAAGTCGAAATCTAT ACCCTCGATTCAGAATCCACTCAGCGGCGGGGGGTACGCGATGCCCAGGAACTTTACCTCAGCTTCGATCAAATTGAAAT TGAAGATATTCGGCTCGTTGGCTTTGAACTGGGGCTATCTGAGGCGAGTCTCGATAATGCCAACGTCCTCTATTCTGAGT TTGGCCGTACCTGGATTGTCAAACTTCTGGAGATGAGCAATGAAGATATCCGCCTTTTTTGCGAAGAACGCCAAGGCCAT GCTGGTTCTATTATGGCTCTGCAGCGGAAATTAAAACGACTCGAAAACCTTAAATATATCCGCCAAACTTGCCCCTTTAA CTACATCGATCAACTGCTCCAGAGCCTTGATGCCGGGAAACACGTAATCATTGAGTTTGGCTCCCAGTCCAATATGCTGT CGTATATGTTGGCGACAAATATGATTACCCGACGCATTCACGCCGCCTATGTGAAAAAAGCAGATCTGTACCTGCAAACC AAAAACGTCCAGAATAAACCGACGCCCCTGGTGATCACCATTGAAGAAGCCCACCGATTTTTAGACTCTAAGATTGTCCA TCAAACCATTTTTGGCACGATCGCCAGGGAAATGCGGAAATATTTTGTCACCCTCCTGGTCGTCGATCAACGTCCCTCCG GTATCGACAACGAAGTCATGTCCCAAATTGGCACGCGGGTAACTTGTTTGCTCAATGACGAAAAAGATATTGATGCGATT TTTACGGGGGTCTCTGGGGGCGGCAACCTACGCTCTGTCCTGGCCAAATTAGATTCCAAACAACAGGCTCTTGTGCTTGG TCACGCTCTCCCGATGCCGGTAGTGATGCGGACGCGCTCCTATGACCAGGCGTTTTACCAAGAAATTGGCTGCCATGACT GGCAAACGATGGCGGATGAAACCTTGTTTGTCGAGGCAGATTTGGCTAAGACAGATCTCGGTTTTTAG
Upstream 100 bases:
>100_bases AACCCAAATCAACACCTGGCAACGTCTCACCACCCCCAGCCCTAGTCCCCAAACCATCGACGTTCCGACAAACCTCTAAT TTCCCCTTCTTCAGTTGCCC
Downstream 100 bases:
>100_bases GAAAATTGTTAAAAAAGTTTACAATGAACAAATATTTTATTGACCAAGTAGTCAAAAAGAACAATTAAATCTATGACAAC GACTTTTGCAACGCTTTTAG
Product: ATPase
Products: NA
Alternate protein names: Conserved Domain Protein; Bipolar DNA Helicase; Universally Conserved Protein
Number of amino acids: Translated: 555; Mature: 554
Protein sequence:
>555_residues MTTEHPLGSVIQGSLSQGLEVRLHGDVSVEEMRVGKFLVVKGSRSQFFCLLTDVSLGTSSPRILADPPNPNDDFLQAVLA GTSTYGTVELAPMLMFTPSQAEEHETENFETLELLPVKTIPSHFSQVYEANEQDFRRVFGWEDDPHHKKFAIGRPLDMDV PICLDLDRFVERSNGIFGKSGTGKSFLTRLLLSGIIKRRAAVNLMFDMHSEYGWEAIEEGKGVSTVKGLRQLFPGQVEIY TLDSESTQRRGVRDAQELYLSFDQIEIEDIRLVGFELGLSEASLDNANVLYSEFGRTWIVKLLEMSNEDIRLFCEERQGH AGSIMALQRKLKRLENLKYIRQTCPFNYIDQLLQSLDAGKHVIIEFGSQSNMLSYMLATNMITRRIHAAYVKKADLYLQT KNVQNKPTPLVITIEEAHRFLDSKIVHQTIFGTIAREMRKYFVTLLVVDQRPSGIDNEVMSQIGTRVTCLLNDEKDIDAI FTGVSGGGNLRSVLAKLDSKQQALVLGHALPMPVVMRTRSYDQAFYQEIGCHDWQTMADETLFVEADLAKTDLGF
Sequences:
>Translated_555_residues MTTEHPLGSVIQGSLSQGLEVRLHGDVSVEEMRVGKFLVVKGSRSQFFCLLTDVSLGTSSPRILADPPNPNDDFLQAVLA GTSTYGTVELAPMLMFTPSQAEEHETENFETLELLPVKTIPSHFSQVYEANEQDFRRVFGWEDDPHHKKFAIGRPLDMDV PICLDLDRFVERSNGIFGKSGTGKSFLTRLLLSGIIKRRAAVNLMFDMHSEYGWEAIEEGKGVSTVKGLRQLFPGQVEIY TLDSESTQRRGVRDAQELYLSFDQIEIEDIRLVGFELGLSEASLDNANVLYSEFGRTWIVKLLEMSNEDIRLFCEERQGH AGSIMALQRKLKRLENLKYIRQTCPFNYIDQLLQSLDAGKHVIIEFGSQSNMLSYMLATNMITRRIHAAYVKKADLYLQT KNVQNKPTPLVITIEEAHRFLDSKIVHQTIFGTIAREMRKYFVTLLVVDQRPSGIDNEVMSQIGTRVTCLLNDEKDIDAI FTGVSGGGNLRSVLAKLDSKQQALVLGHALPMPVVMRTRSYDQAFYQEIGCHDWQTMADETLFVEADLAKTDLGF >Mature_554_residues TTEHPLGSVIQGSLSQGLEVRLHGDVSVEEMRVGKFLVVKGSRSQFFCLLTDVSLGTSSPRILADPPNPNDDFLQAVLAG TSTYGTVELAPMLMFTPSQAEEHETENFETLELLPVKTIPSHFSQVYEANEQDFRRVFGWEDDPHHKKFAIGRPLDMDVP ICLDLDRFVERSNGIFGKSGTGKSFLTRLLLSGIIKRRAAVNLMFDMHSEYGWEAIEEGKGVSTVKGLRQLFPGQVEIYT LDSESTQRRGVRDAQELYLSFDQIEIEDIRLVGFELGLSEASLDNANVLYSEFGRTWIVKLLEMSNEDIRLFCEERQGHA GSIMALQRKLKRLENLKYIRQTCPFNYIDQLLQSLDAGKHVIIEFGSQSNMLSYMLATNMITRRIHAAYVKKADLYLQTK NVQNKPTPLVITIEEAHRFLDSKIVHQTIFGTIAREMRKYFVTLLVVDQRPSGIDNEVMSQIGTRVTCLLNDEKDIDAIF TGVSGGGNLRSVLAKLDSKQQALVLGHALPMPVVMRTRSYDQAFYQEIGCHDWQTMADETLFVEADLAKTDLGF
Specific function: Unknown
COG id: COG0433
COG function: function code R; Predicted ATPase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62609; Mature: 62478
Theoretical pI: Translated: 5.29; Mature: 5.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTEHPLGSVIQGSLSQGLEVRLHGDVSVEEMRVGKFLVVKGSRSQFFCLLTDVSLGTSS CCCCCCCHHHHHHHHCCCCEEEEECCCCHHHEECCEEEEEECCCCEEEEEEEEEECCCCC PRILADPPNPNDDFLQAVLAGTSTYGTVELAPMLMFTPSQAEEHETENFETLELLPVKTI CEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEECCHH PSHFSQVYEANEQDFRRVFGWEDDPHHKKFAIGRPLDMDVPICLDLDRFVERSNGIFGKS HHHHHHHHHCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEECHHHHHHHCCCCCCCC GTGKSFLTRLLLSGIIKRRAAVNLMFDMHSEYGWEAIEEGKGVSTVKGLRQLFPGQVEIY CCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEE TLDSESTQRRGVRDAQELYLSFDQIEIEDIRLVGFELGLSEASLDNANVLYSEFGRTWIV EECCCHHHHCCCHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH KLLEMSNEDIRLFCEERQGHAGSIMALQRKLKRLENLKYIRQTCPFNYIDQLLQSLDAGK HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC HVIIEFGSQSNMLSYMLATNMITRRIHAAYVKKADLYLQTKNVQNKPTPLVITIEEAHRF EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEHHHHHH LDSKIVHQTIFGTIAREMRKYFVTLLVVDQRPSGIDNEVMSQIGTRVTCLLNDEKDIDAI HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCCCCE FTGVSGGGNLRSVLAKLDSKQQALVLGHALPMPVVMRTRSYDQAFYQEIGCHDWQTMADE EECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHCCC TLFVEADLAKTDLGF EEEEEECCCCCCCCC >Mature Secondary Structure TTEHPLGSVIQGSLSQGLEVRLHGDVSVEEMRVGKFLVVKGSRSQFFCLLTDVSLGTSS CCCCCCHHHHHHHHCCCCEEEEECCCCHHHEECCEEEEEECCCCEEEEEEEEEECCCCC PRILADPPNPNDDFLQAVLAGTSTYGTVELAPMLMFTPSQAEEHETENFETLELLPVKTI CEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEEEECCCCCHHHCCCCCCEEEEEECCHH PSHFSQVYEANEQDFRRVFGWEDDPHHKKFAIGRPLDMDVPICLDLDRFVERSNGIFGKS HHHHHHHHHCCHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEECHHHHHHHCCCCCCCC GTGKSFLTRLLLSGIIKRRAAVNLMFDMHSEYGWEAIEEGKGVSTVKGLRQLFPGQVEIY CCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHCCCCHHHHHHHHHHCCCCEEEE TLDSESTQRRGVRDAQELYLSFDQIEIEDIRLVGFELGLSEASLDNANVLYSEFGRTWIV EECCCHHHHCCCHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH KLLEMSNEDIRLFCEERQGHAGSIMALQRKLKRLENLKYIRQTCPFNYIDQLLQSLDAGK HHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC HVIIEFGSQSNMLSYMLATNMITRRIHAAYVKKADLYLQTKNVQNKPTPLVITIEEAHRF EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCEEEEEHHHHHH LDSKIVHQTIFGTIAREMRKYFVTLLVVDQRPSGIDNEVMSQIGTRVTCLLNDEKDIDAI HHHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCHHHHHHHCCEEEEEECCCCCCCCE FTGVSGGGNLRSVLAKLDSKQQALVLGHALPMPVVMRTRSYDQAFYQEIGCHDWQTMADE EECCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCHHHHCCC TLFVEADLAKTDLGF EEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA