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The map label for this gene is ymfC [C]

Identifier: 170078980

GI number: 170078980

Start: 2466758

End: 2467429

Strand: Direct

Name: ymfC [C]

Synonym: SYNPCC7002_A2385

Alternate gene names: 170078980

Gene position: 2466758-2467429 (Clockwise)

Preceding gene: 170078975

Following gene: 170078984

Centisome position: 82.01

GC content: 53.42

Gene sequence:

>672_bases
ATGCAGCACTCATACGTTTTGCTCCACAAGCCTTATAACGTCCTTTGTCAGTTTACTGATAATAGCCCCCAAGGGTCACA
GCGGCAAACGTTGAAGGATTTTGTGCCTGTGCCAGATATTTATTCCGTGGGTCGTTTGGATTTGGATAGCGAAGGGCTTT
TATTATTGACCAATGATGCTCCTTTAAAGCATTATCTTTGCGAACCGAAATTTGCCCACTCCCGCACCTATTGGGTACAG
GTGGAAAATATCCCAGACGGGCAGGCTTTAGAACAGTTGCGCCAGGGGGTAATGGTGCAAGGGAAAAAAACGCGGCCGGC
GATCGCCAATCTCTTGACCCCTGAGCCAACCGTCCCCGCACGAGAACCCCCGATCCGCTTCCGGAAAAATGTCCCGACAG
CCTGGTTAGAACTGACCCTAACGGAAGGGCGAAATCGTCAGGTGCGCCGCATGACTGCCGCAGTGGGCCACCCCACGTTA
CGCCTTATGCGCGTCGCCATAGGTGCAGGGCCAGCGAAATTAACCCTCACTGGTCTGGGGCCGGGGGAATGGCGGCATTT
AACGACGGCGGAAATTGGAGCCTTACAAAACCTGGTAAAAAAAGCCAAGCCAAACCAGCGATCGCCCCACAAAAAAACAG
CCAGCCGCAAACCGAAGGGAAAACGCCGCTGA

Upstream 100 bases:

>100_bases
GCAGTCGCAAGGGGGCTGGGTTGGGTTTCCTGAAGTTGGATTTTTTCTGGTGTCTGGGAGGTGACTTCGGGCATGATGTT
AGTAGTCATCTCTTGTTCTA

Downstream 100 bases:

>100_bases
CTATTTTGATCTTGAAAGATGTTTGGAACGAAAACGAAACTTGAAGATTTAAGATTTGCTGGTAGTTGCCCACCAGATCC
CTATTGAGAGGGGCGCTTAA

Product: RNA pseudouridine synthase

Products: NA

Alternate protein names: RNA pseudouridylate synthase; RNA-uridine isomerase [H]

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MQHSYVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDAPLKHYLCEPKFAHSRTYWVQ
VENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPAREPPIRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTL
RLMRVAIGAGPAKLTLTGLGPGEWRHLTTAEIGALQNLVKKAKPNQRSPHKKTASRKPKGKRR

Sequences:

>Translated_223_residues
MQHSYVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDAPLKHYLCEPKFAHSRTYWVQ
VENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPAREPPIRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTL
RLMRVAIGAGPAKLTLTGLGPGEWRHLTTAEIGALQNLVKKAKPNQRSPHKKTASRKPKGKRR
>Mature_223_residues
MQHSYVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDAPLKHYLCEPKFAHSRTYWVQ
VENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPAREPPIRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTL
RLMRVAIGAGPAKLTLTGLGPGEWRHLTTAEIGALQNLVKKAKPNQRSPHKKTASRKPKGKRR

Specific function: Unknown

COG id: COG1187

COG function: function code J; 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pseudouridine synthase rsuA family [H]

Homologues:

Organism=Escherichia coli, GI87081838, Length=183, Percent_Identity=51.9125683060109, Blast_Score=177, Evalue=5e-46,
Organism=Escherichia coli, GI1788510, Length=198, Percent_Identity=32.3232323232323, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787524, Length=196, Percent_Identity=35.2040816326531, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1790453, Length=198, Percent_Identity=28.2828282828283, Blast_Score=74, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020103
- InterPro:   IPR006145
- InterPro:   IPR000748
- InterPro:   IPR018496 [H]

Pfam domain/function: PF00849 PseudoU_synth_2 [H]

EC number: NA

Molecular weight: Translated: 25052; Mature: 25052

Theoretical pI: Translated: 11.02; Mature: 11.02

Prosite motif: PS01149 PSI_RSU

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHSYVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDA
CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
PLKHYLCEPKFAHSRTYWVQVENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPA
CHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCEECCCCCCHHHHHHCCCCCCCCC
REPPIRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTLRLMRVAIGAGPAKLTLTGLG
CCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECC
PGEWRHLTTAEIGALQNLVKKAKPNQRSPHKKTASRKPKGKRR
CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MQHSYVLLHKPYNVLCQFTDNSPQGSQRQTLKDFVPVPDIYSVGRLDLDSEGLLLLTNDA
CCCCEEEEECCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCC
PLKHYLCEPKFAHSRTYWVQVENIPDGQALEQLRQGVMVQGKKTRPAIANLLTPEPTVPA
CHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHCCEECCCCCCHHHHHHCCCCCCCCC
REPPIRFRKNVPTAWLELTLTEGRNRQVRRMTAAVGHPTLRLMRVAIGAGPAKLTLTGLG
CCCCCHHHCCCCCEEEEEEECCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCEEEEEECC
PGEWRHLTTAEIGALQNLVKKAKPNQRSPHKKTASRKPKGKRR
CCCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]