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The map label for this gene is cpcB

Identifier: 170078807

GI number: 170078807

Start: 2300607

End: 2301125

Strand: Direct

Name: cpcB

Synonym: SYNPCC7002_A2209

Alternate gene names: 170078807

Gene position: 2300607-2301125 (Clockwise)

Preceding gene: 170078806

Following gene: 170078808

Centisome position: 76.48

GC content: 51.06

Gene sequence:

>519_bases
ATGTTTGATATTTTTACCCGGGTTGTTTCTCAGGCTGATGCCCGAGGTGAGTTCATTTCTAGCGACAAGCTCGAAGCTCT
CAAAAAAGTTGTTGCCGAAGGTACCAAGCGTTCTGATGCCGTAAGCCGCATGACCAACAATGCGTCTTCCATCGTTACTA
ACGCTGCTCGTCAACTCTTCGCTGACCAGCCCCAACTCATCGCTCCCGGTGGAAATGCTTACACCAACCGTCGCATGGCT
GCTTGTCTTCGCGACATGGAAATCATCCTCCGTTATGTAACCTACGCAACCTTCACTGGTGATGCGTCTGTACTCAACGA
CCGCTGCCTCAATGGCCTCCGTGAAACCTACGTTGCGCTTGGTGTTCCCGGTGCTTCCGTTGCTGCTGGTGTACGTGCAA
TGGGTAAAGCTGCTGTAGCGATTGTTATGGATCCCGCTGGTGTAACTTCCGGTGACTGCAGCTCTCTCCAACAGGAAATC
GAACTCTACTTCGAAACTGCTGCAAAAGCTGTTGAATAA

Upstream 100 bases:

>100_bases
TTTCAGCAAGAGAGCCCCTCAGCACTTGCTTCACTCTTGTTAGTAAGCAAACCGCACAAAATAAATCCCACTCATCAAAA
TATAAGTAGGAGATAAAAAC

Downstream 100 bases:

>100_bases
TCTTTTTTAATTCAACTCTGACATTTTTCGTTTTAAGTCTTACCGATACCGTAAGACGCTCTTTTAAAGAAAATTATTGA
TAATCCATAGGGAGATAATC

Product: phycocyanin, beta subunit

Products: NA

Alternate protein names: beta-PC

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MFDIFTRVVSQADARGEFISSDKLEALKKVVAEGTKRSDAVSRMTNNASSIVTNAARQLFADQPQLIAPGGNAYTNRRMA
ACLRDMEIILRYVTYATFTGDASVLNDRCLNGLRETYVALGVPGASVAAGVRAMGKAAVAIVMDPAGVTSGDCSSLQQEI
ELYFETAAKAVE

Sequences:

>Translated_172_residues
MFDIFTRVVSQADARGEFISSDKLEALKKVVAEGTKRSDAVSRMTNNASSIVTNAARQLFADQPQLIAPGGNAYTNRRMA
ACLRDMEIILRYVTYATFTGDASVLNDRCLNGLRETYVALGVPGASVAAGVRAMGKAAVAIVMDPAGVTSGDCSSLQQEI
ELYFETAAKAVE
>Mature_172_residues
MFDIFTRVVSQADARGEFISSDKLEALKKVVAEGTKRSDAVSRMTNNASSIVTNAARQLFADQPQLIAPGGNAYTNRRMA
ACLRDMEIILRYVTYATFTGDASVLNDRCLNGLRETYVALGVPGASVAAGVRAMGKAAVAIVMDPAGVTSGDCSSLQQEI
ELYFETAAKAVE

Specific function: Light-harvesting photosynthetic bile pigment-protein from the phycobiliprotein complex

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Cytoplasmic side. Note=Part of the phycobilisome rod (By similarity)

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phycobiliprotein family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PHCB_SYNP2 (P03944)

Other databases:

- EMBL:   K02660
- EMBL:   K02659
- EMBL:   CP000951
- RefSeq:   YP_001735445.1
- ProteinModelPortal:   P03944
- SMR:   P03944
- GeneID:   6055532
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2209
- HOGENOM:   HBG635139
- OMA:   NAYTSRR
- ProtClustDB:   CLSK892737
- GO:   GO:0030089
- GO:   GO:0015979
- InterPro:   IPR009050
- InterPro:   IPR012128
- InterPro:   IPR006247
- Gene3D:   G3DSA:1.10.490.20
- PIRSF:   PIRSF000081
- TIGRFAMs:   TIGR01339

Pfam domain/function: PF00502 Phycobilisome; SSF46458 Globin_like

EC number: NA

Molecular weight: Translated: 18336; Mature: 18336

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: BINDING 82-82 BINDING 153-153

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIFTRVVSQADARGEFISSDKLEALKKVVAEGTKRSDAVSRMTNNASSIVTNAARQLF
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
ADQPQLIAPGGNAYTNRRMAACLRDMEIILRYVTYATFTGDASVLNDRCLNGLRETYVAL
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GVPGASVAAGVRAMGKAAVAIVMDPAGVTSGDCSSLQQEIELYFETAAKAVE
CCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFDIFTRVVSQADARGEFISSDKLEALKKVVAEGTKRSDAVSRMTNNASSIVTNAARQLF
CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHH
ADQPQLIAPGGNAYTNRRMAACLRDMEIILRYVTYATFTGDASVLNDRCLNGLRETYVAL
CCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
GVPGASVAAGVRAMGKAAVAIVMDPAGVTSGDCSSLQQEIELYFETAAKAVE
CCCCHHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 6096868; 6438628; 2447072