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The map label for this gene is cpcU

Identifier: 170078657

GI number: 170078657

Start: 2138508

End: 2139059

Strand: Direct

Name: cpcU

Synonym: SYNPCC7002_A2053

Alternate gene names: 170078657

Gene position: 2138508-2139059 (Clockwise)

Preceding gene: 170078656

Following gene: 170078660

Centisome position: 71.09

GC content: 50.18

Gene sequence:

>552_bases
ATGGATATCAATGCCTTTATCCATCAGAGTGCGGGCAATTGGTTCGCCCAGCGCACATTTTATCAAGCCCACCACCCAGA
GCCTGATAATGGCAAAGCTAATTTGGCCTTTGAGCTACTGCCCCTCGATCACCCAGAAGTTAGTCGTTTTGCGGCGGCGA
TCGCCCAGGCTCCCAATGAACATTGGCGTGTCTTCCAGAGCAGTTGGGACACCTCCGTGGATTGGGGTAAACCAAAAGCC
GTTGGGAGTTCTCTCTTTGCCTTTGTGATTAACCCCGACCAGCCGACCCAAGGGCAAGCCTTTAGCTTGGACGAGCGCAC
CCTTGCCCAGGGTCAGTATCGCCTTGGGGAAGATCAAATTTTGATCGTTACCCTAGAAGCGGGAGAAGTAAAAATTATCG
AACGGCAATGGTTTGGCAATGAAAATCTCCGCCTCAGAACCAACATCGTCACGGGTAAAACAGGCGTTTTACAGACTGCT
TTTTACTCAGAAATCCGTCGGATCATTGAACCCGAAAAAACTGCAGAAGTAACCGCTGAAGCCAGTAACTAA

Upstream 100 bases:

>100_bases
ACTGGGAGTAACTTACTGGGAATAACTGATTTTTGTCAGCCCTAGGGCAGTCCGGTATGATGGATCGAATTCTGACTTTT
ATCCTGTTGTAACTGTTTTT

Downstream 100 bases:

>100_bases
CGAACGCTTTTAGTGCTCGAAAACATTGTCATAAAAGGCAAGATCTAAACTGATAAAGGTGGGGAGACAACGGAGACATT
CTTCCATCAGAGGCCAACGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MDINAFIHQSAGNWFAQRTFYQAHHPEPDNGKANLAFELLPLDHPEVSRFAAAIAQAPNEHWRVFQSSWDTSVDWGKPKA
VGSSLFAFVINPDQPTQGQAFSLDERTLAQGQYRLGEDQILIVTLEAGEVKIIERQWFGNENLRLRTNIVTGKTGVLQTA
FYSEIRRIIEPEKTAEVTAEASN

Sequences:

>Translated_183_residues
MDINAFIHQSAGNWFAQRTFYQAHHPEPDNGKANLAFELLPLDHPEVSRFAAAIAQAPNEHWRVFQSSWDTSVDWGKPKA
VGSSLFAFVINPDQPTQGQAFSLDERTLAQGQYRLGEDQILIVTLEAGEVKIIERQWFGNENLRLRTNIVTGKTGVLQTA
FYSEIRRIIEPEKTAEVTAEASN
>Mature_183_residues
MDINAFIHQSAGNWFAQRTFYQAHHPEPDNGKANLAFELLPLDHPEVSRFAAAIAQAPNEHWRVFQSSWDTSVDWGKPKA
VGSSLFAFVINPDQPTQGQAFSLDERTLAQGQYRLGEDQILIVTLEAGEVKIIERQWFGNENLRLRTNIVTGKTGVLQTA
FYSEIRRIIEPEKTAEVTAEASN

Specific function: Attaches a phycocyanobilin (PCB) chromophore to 'Cys-82' of the C-phycocyanain beta subunit (PhcB) and the unique PCB that is attached to allophyocyanin alpha and beta subunits (ApcA and ApcB)

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CpcS/CpeS biliprotein lyase family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CPCU_SYNP2 (A8HTN2)

Other databases:

- EMBL:   EU145732
- EMBL:   CP000951
- RefSeq:   YP_001735295.1
- ProteinModelPortal:   A8HTN2
- SMR:   A8HTN2
- GeneID:   6055480
- GenomeReviews:   CP000951_GR
- KEGG:   syp:SYNPCC7002_A2053
- HOGENOM:   HBG442183
- OMA:   DINAFIH
- GO:   GO:0005488
- HAMAP:   MF_01459
- InterPro:   IPR012674
- InterPro:   IPR018536
- Gene3D:   G3DSA:2.40.128.20

Pfam domain/function: PF09367 CpeS

EC number: NA

Molecular weight: Translated: 20596; Mature: 20596

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINAFIHQSAGNWFAQRTFYQAHHPEPDNGKANLAFELLPLDHPEVSRFAAAIAQAPNE
CCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCH
HWRVFQSSWDTSVDWGKPKAVGSSLFAFVINPDQPTQGQAFSLDERTLAQGQYRLGEDQI
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCHHHHHCCCEEECCCCE
LIVTLEAGEVKIIERQWFGNENLRLRTNIVTGKTGVLQTAFYSEIRRIIEPEKTAEVTAE
EEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEE
ASN
CCC
>Mature Secondary Structure
MDINAFIHQSAGNWFAQRTFYQAHHPEPDNGKANLAFELLPLDHPEVSRFAAAIAQAPNE
CCCCCEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCH
HWRVFQSSWDTSVDWGKPKAVGSSLFAFVINPDQPTQGQAFSLDERTLAQGQYRLGEDQI
HHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCEEECCHHHHHCCCEEECCCCE
LIVTLEAGEVKIIERQWFGNENLRLRTNIVTGKTGVLQTAFYSEIRRIIEPEKTAEVTAE
EEEEECCCCEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEE
ASN
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA