Definition Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession NC_010475
Length 3,008,047

Click here to switch to the map view.

The map label for this gene is 170078586

Identifier: 170078586

GI number: 170078586

Start: 2066583

End: 2067017

Strand: Direct

Name: 170078586

Synonym: SYNPCC7002_A1982

Alternate gene names: NA

Gene position: 2066583-2067017 (Clockwise)

Preceding gene: 170078585

Following gene: 170078587

Centisome position: 68.7

GC content: 52.18

Gene sequence:

>435_bases
ATGAATCTGTCTGTTTCTGCTGTCCTTATCTATTCGTTGATCGGCGCGGTATTTCTGGTTTATCTACCCTATGGGGTGGT
GGGCTATGCACGGGTTAAACTGGCTGGTCAAATGAGCGATCGCCTGGAGATGTTTCGGCGGCCTAGGGCAACGGTAGATC
TATTGCCAGATTATGCGCAGCGGGCCAATTGGGCGCACCAGAATGCTTTTGAAGCGTTGGCGGTTTATGGCGTTGCTTGT
TTGTCTGCGTTGGTAACGGGGGTGGATTCTCCCTGGGCAAAGATTGCGGCGATCGCCTTTTTGGTGGCGAGAACCCTCTA
CCCGTTGTTTTATATCCTCAACATTCCGGTGTTGCGTTCGATGATGTTTGCCGTGGGGAATATCGCCAACATTACGCTTT
TTGCCTTGAGTGCGATCGCCGTCCAGAGCCTCTAG

Upstream 100 bases:

>100_bases
ACCTGCCAAGAAGCAGAAGAACAGCGAAAACTTGTCACCCTCTTCTATTTCGATTAATTTTTTTGTGCTACCCATTTGCC
CAGTTGTTTAGGATTAATCC

Downstream 100 bases:

>100_bases
GAAAATCCCCAGGGCCTCGCACAACGTTTACAGGCCAATGTGAACCTTGAAATTTTTATCTGTTGAATTCAGCTAAGTAT
CTTTATGGCTTCTACAAATT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 144; Mature: 144

Protein sequence:

>144_residues
MNLSVSAVLIYSLIGAVFLVYLPYGVVGYARVKLAGQMSDRLEMFRRPRATVDLLPDYAQRANWAHQNAFEALAVYGVAC
LSALVTGVDSPWAKIAAIAFLVARTLYPLFYILNIPVLRSMMFAVGNIANITLFALSAIAVQSL

Sequences:

>Translated_144_residues
MNLSVSAVLIYSLIGAVFLVYLPYGVVGYARVKLAGQMSDRLEMFRRPRATVDLLPDYAQRANWAHQNAFEALAVYGVAC
LSALVTGVDSPWAKIAAIAFLVARTLYPLFYILNIPVLRSMMFAVGNIANITLFALSAIAVQSL
>Mature_144_residues
MNLSVSAVLIYSLIGAVFLVYLPYGVVGYARVKLAGQMSDRLEMFRRPRATVDLLPDYAQRANWAHQNAFEALAVYGVAC
LSALVTGVDSPWAKIAAIAFLVARTLYPLFYILNIPVLRSMMFAVGNIANITLFALSAIAVQSL

Specific function: Unknown

COG id: COG3686

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15717; Mature: 15717

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLSVSAVLIYSLIGAVFLVYLPYGVVGYARVKLAGQMSDRLEMFRRPRATVDLLPDYAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RANWAHQNAFEALAVYGVACLSALVTGVDSPWAKIAAIAFLVARTLYPLFYILNIPVLRS
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMFAVGNIANITLFALSAIAVQSL
HHHHHCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLSVSAVLIYSLIGAVFLVYLPYGVVGYARVKLAGQMSDRLEMFRRPRATVDLLPDYAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
RANWAHQNAFEALAVYGVACLSALVTGVDSPWAKIAAIAFLVARTLYPLFYILNIPVLRS
HCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MMFAVGNIANITLFALSAIAVQSL
HHHHHCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA