BacMap

Definition	Synechococcus sp. PCC 7002 chromosome, complete genome.
Accession	NC_010475
Length	3,008,047

Click here to switch to the map view.

The map label for this gene is ucpA [C]

Identifier: 170078583

GI number: 170078583

Start: 2061341

End: 2062147

Strand: Reverse

Name: ucpA [C]

Synonym: SYNPCC7002_A1978

Alternate gene names: 170078583

Gene position: 2062147-2061341 (Counterclockwise)

Preceding gene: 170078584

Following gene: 170078582

Centisome position: 68.55

GC content: 52.42

Gene sequence:

>807_bases
ATGCGACACGCAATTATTACGGGGGGATCGAGTGGGATTGGTTTGGCGATCGCCTGTCAATTAGCTCAACAGGGGAATGT
CAATCTTTCAATCATTGCCCGCAGTCCCACTAAGCTCCAGGTAGCGCAAACTCAGATTCAAGAAGCTTTTGCCGATGCCC
AGCAGCAATGTTTAACCCTCACGGCGGATGTGGCCCAACGGTTGGAAATTGAACAGGCGATCGCCACAGCCATAGAAAAA
TTTGGAGCGCCGGATTTATTAATCACCTCAGCGGGAATAGCCCACCCTGGTTATTTTCAGGAACTGCCCCTCGAAATTTT
TGAACAAACCATGGCGGTAAATTATTTCGGCACGCTGTATGCAATTCGTGCCGCTCTCCCAGCAATGCAGACCCAAAACC
AGGGCCAAATTGTGATGATTTCCTCTGGAGCGGGTCTAGTGGGTTTGTTTGGCTATACTCCCTACAGTCCGAGTAAATTT
GCCCTGCGGGGTCTGGCGGAATCCCTCCGGGGAGAATTAAAGTCCCAGGGGATTCAGGTGGCGATCACCTATCCGCCCGA
TACCGATACCCCCCAACTGGCCGCCGAAAATTTGACAAAACCGCCGGAAACCAAGTTAATTACAGAGACCGCCCAAATGT
GGACAGCAGAACGGGTTGCCGCCACCATTCTCCGGGGTATTCAGCGACAACAATTCGTTATTACCCCTGGCTTGGAAATG
CAACTGCTCTATCGCCTCCATAGCCTGCTGGCCCCCGTCCTGCAATGGTATTTTGATCGACTGGTGGCCCGCGCCCGCCA
ACACTAA

Upstream 100 bases:

>100_bases
CCGGACCAGTGTGATGGCGACCCACACCCAGGAACATTTAGACAAAGCCCTCGCAATTTTTGCGGAAGTCGGTCAGCAAT
TTCTGGCTGGGGCTGAATAG

Downstream 100 bases:

>100_bases
ATCTTTATCCTTTTCCTTTACCCTGACCCCATGGGATCGCCCACCATGACCCATTCTGCGAAAACCATTGTTGATCTGCT
TCGTCACCGCGCTGACAGCA

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MRHAIITGGSSGIGLAIACQLAQQGNVNLSIIARSPTKLQVAQTQIQEAFADAQQQCLTLTADVAQRLEIEQAIATAIEK
FGAPDLLITSAGIAHPGYFQELPLEIFEQTMAVNYFGTLYAIRAALPAMQTQNQGQIVMISSGAGLVGLFGYTPYSPSKF
ALRGLAESLRGELKSQGIQVAITYPPDTDTPQLAAENLTKPPETKLITETAQMWTAERVAATILRGIQRQQFVITPGLEM
QLLYRLHSLLAPVLQWYFDRLVARARQH

Sequences:

>Translated_268_residues
MRHAIITGGSSGIGLAIACQLAQQGNVNLSIIARSPTKLQVAQTQIQEAFADAQQQCLTLTADVAQRLEIEQAIATAIEK
FGAPDLLITSAGIAHPGYFQELPLEIFEQTMAVNYFGTLYAIRAALPAMQTQNQGQIVMISSGAGLVGLFGYTPYSPSKF
ALRGLAESLRGELKSQGIQVAITYPPDTDTPQLAAENLTKPPETKLITETAQMWTAERVAATILRGIQRQQFVITPGLEM
QLLYRLHSLLAPVLQWYFDRLVARARQH
>Mature_268_residues
MRHAIITGGSSGIGLAIACQLAQQGNVNLSIIARSPTKLQVAQTQIQEAFADAQQQCLTLTADVAQRLEIEQAIATAIEK
FGAPDLLITSAGIAHPGYFQELPLEIFEQTMAVNYFGTLYAIRAALPAMQTQNQGQIVMISSGAGLVGLFGYTPYSPSKF
ALRGLAESLRGELKSQGIQVAITYPPDTDTPQLAAENLTKPPETKLITETAQMWTAERVAATILRGIQRQQFVITPGLEM
QLLYRLHSLLAPVLQWYFDRLVARARQH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4503817, Length=252, Percent_Identity=41.6666666666667, Blast_Score=200, Evalue=9e-52,
Organism=Homo sapiens, GI7706318, Length=181, Percent_Identity=30.939226519337, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI7657478, Length=186, Percent_Identity=34.4086021505376, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI40807363, Length=249, Percent_Identity=28.9156626506024, Blast_Score=86, Evalue=4e-17,
Organism=Homo sapiens, GI25282469, Length=223, Percent_Identity=27.3542600896861, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI32483357, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI20149619, Length=275, Percent_Identity=28, Blast_Score=81, Evalue=8e-16,
Organism=Homo sapiens, GI40254992, Length=214, Percent_Identity=29.9065420560748, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI4504505, Length=188, Percent_Identity=28.7234042553192, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI126723191, Length=182, Percent_Identity=29.1208791208791, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI7705855, Length=208, Percent_Identity=27.8846153846154, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI210032110, Length=255, Percent_Identity=24.7058823529412, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI223718074, Length=181, Percent_Identity=32.0441988950276, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI310128830, Length=240, Percent_Identity=26.25, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI310115468, Length=240, Percent_Identity=26.25, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI32455239, Length=208, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI5031765, Length=208, Percent_Identity=31.25, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226371731, Length=199, Percent_Identity=29.1457286432161, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI5031737, Length=189, Percent_Identity=30.6878306878307, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI33667109, Length=189, Percent_Identity=30.6878306878307, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI4758504, Length=202, Percent_Identity=30.6930693069307, Blast_Score=68, Evalue=1e-11,
Organism=Homo sapiens, GI157739938, Length=186, Percent_Identity=24.7311827956989, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI126723750, Length=189, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI22507405, Length=293, Percent_Identity=26.6211604095563, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI38348362, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI66933014, Length=136, Percent_Identity=31.6176470588235, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI38424085, Length=179, Percent_Identity=30.1675977653631, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI87082100, Length=223, Percent_Identity=31.390134529148, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787820, Length=186, Percent_Identity=28.494623655914, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1786812, Length=190, Percent_Identity=30, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1787335, Length=188, Percent_Identity=29.2553191489362, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=31.413612565445, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=197, Percent_Identity=32.48730964467, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17564282, Length=192, Percent_Identity=29.6875, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI71997402, Length=176, Percent_Identity=33.5227272727273, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=182, Percent_Identity=32.967032967033, Blast_Score=78, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI71994600, Length=190, Percent_Identity=34.7368421052632, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI25147288, Length=226, Percent_Identity=26.5486725663717, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17568967, Length=177, Percent_Identity=29.9435028248588, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17508895, Length=240, Percent_Identity=25.4166666666667, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=171, Percent_Identity=28.6549707602339, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193203117, Length=170, Percent_Identity=28.8235294117647, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17551412, Length=190, Percent_Identity=30, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=187, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=115, Percent_Identity=39.1304347826087, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323882, Length=236, Percent_Identity=27.1186440677966, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6319742, Length=282, Percent_Identity=26.9503546099291, Blast_Score=71, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356301, Length=255, Percent_Identity=34.9019607843137, Blast_Score=150, Evalue=6e-37,
Organism=Drosophila melanogaster, GI21358495, Length=255, Percent_Identity=27.0588235294118, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI281364892, Length=211, Percent_Identity=31.7535545023697, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24581726, Length=139, Percent_Identity=31.6546762589928, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24641232, Length=190, Percent_Identity=30.5263157894737, Blast_Score=82, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28571387, Length=215, Percent_Identity=30.2325581395349, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI23397609, Length=183, Percent_Identity=31.1475409836066, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571526, Length=181, Percent_Identity=31.4917127071823, Blast_Score=76, Evalue=3e-14,
Organism=Drosophila melanogaster, GI17737361, Length=204, Percent_Identity=31.3725490196078, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24639444, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24641388, Length=212, Percent_Identity=30.6603773584906, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI18859837, Length=185, Percent_Identity=26.4864864864865, Blast_Score=72, Evalue=4e-13,
Organism=Drosophila melanogaster, GI221510726, Length=154, Percent_Identity=29.8701298701299, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21357041, Length=181, Percent_Identity=29.2817679558011, Blast_Score=71, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24644339, Length=186, Percent_Identity=26.3440860215054, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI116007238, Length=192, Percent_Identity=27.0833333333333, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007236, Length=235, Percent_Identity=26.3829787234043, Blast_Score=67, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 29206; Mature: 29206

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHAIITGGSSGIGLAIACQLAQQGNVNLSIIARSPTKLQVAQTQIQEAFADAQQQCLTL
CCCEEEECCCCCCCHHHEEEHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
TADVAQRLEIEQAIATAIEKFGAPDLLITSAGIAHPGYFQELPLEIFEQTMAVNYFGTLY
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AIRAALPAMQTQNQGQIVMISSGAGLVGLFGYTPYSPSKFALRGLAESLRGELKSQGIQV
HHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE
AITYPPDTDTPQLAAENLTKPPETKLITETAQMWTAERVAATILRGIQRQQFVITPGLEM
EEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH
QLLYRLHSLLAPVLQWYFDRLVARARQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MRHAIITGGSSGIGLAIACQLAQQGNVNLSIIARSPTKLQVAQTQIQEAFADAQQQCLTL
CCCEEEECCCCCCCHHHEEEHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
TADVAQRLEIEQAIATAIEKFGAPDLLITSAGIAHPGYFQELPLEIFEQTMAVNYFGTLY
HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AIRAALPAMQTQNQGQIVMISSGAGLVGLFGYTPYSPSKFALRGLAESLRGELKSQGIQV
HHHHHHHHHCCCCCCCEEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEE
AITYPPDTDTPQLAAENLTKPPETKLITETAQMWTAERVAATILRGIQRQQFVITPGLEM
EEECCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHH
QLLYRLHSLLAPVLQWYFDRLVARARQH
HHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA