| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is 170078557
Identifier: 170078557
GI number: 170078557
Start: 2031591
End: 2032772
Strand: Direct
Name: 170078557
Synonym: SYNPCC7002_A1952
Alternate gene names: NA
Gene position: 2031591-2032772 (Clockwise)
Preceding gene: 170078556
Following gene: 170078560
Centisome position: 67.54
GC content: 51.52
Gene sequence:
>1182_bases ATGATGAAGCCGAAAAATTCCTGGTGGCGATCGCCAAAAATTTTATGGATTAAACTTTGTCTGATTGGCAGCTTACTGAT CGGTTGTGCCCCCGTTGTGCCCCCGGCAGAAAGCAATCCCCGCACCTTTGCCCCCCTGAGCGTAGAATTTCTAGACGAAT ATTGGTTACCCAAAACAGAGTTTCAAGGGACAACGGTCGGCGGCCTATCGGCTCTCTATTACGATGCCCAGACCGGTGAT TATTATGCCCTGAGTGACGACCGTTCCCAGTTTGCCCCGGCCCGCTTTTATACCTTCGATCTGGACATCGACGAAACCGG AGCCATTCCCCAAATCCAGCAGCTCAACCTCAAGGGCATGACGCCTTTAACCACCCCTGACGGTGAAACCTTTGCCCCAG GAAGCCTTGACCCAGAAGGATTGGTGCTCTCGCCCCGCAATACGTTATTTATTTCCAGCGAGGGAGATACCGACGCCGCC ATTGACCCGTTTGTAAAAGAATTTGATCACGAAGGTCGTGAATTAACGTCCCTCAGAATTCCCCAACGTTTTCTAACAGG CGATCGCCAGCGGGGTGTGCGCAATAATTTAGGATTTGAATCCTTGGCCATTTCTGCCCCTTCCCAAGCCGCCGTTGACC CCTTTCGGATCTTTGTCGCTCCAGAATCATCTCTTCATCAAGACACGCGTTCTGATAATGTGGGTGCGCCCATCCGTCTA CTGCATTACGTCATCAATCCCATCGGCGAGCCTGTGTTAATCGCCGAGCATCTCTATCCTTTAGAACCTGCACCCCAAGG AACCTTTTCCAATGGCCTCGTGGAAATGATTGCCCTCCCCCAGGAAGGTTATTTTCTCAGCCTGGAGCGCAGCTATGGCC TTGGGGGGGTTGGTGCGAAACTGTTCCAGGTGACCATTGGTAATGCCACCGACACTGCCCGCATCGAATCCCTCGCCGGA AATCCAGAGACCGTTGTCCCCATGCAGAAAACCCTATTGCTGGATCTGCGACAGTTGGGGATTGGCCTCGATAACCTAGA AGGTATGACCCTAGGGCCACGGCTTGCCGATGGCAGCCAAAGTTTACTGTTGATCAGCGATGATAATTTCAGTACCGATC AGGTAAATCAACTTTTGCTTTTTCGCTTGAGTAATTCGGCGGCTAAAGTCACATCAAAATAA
Upstream 100 bases:
>100_bases ATCTAAAACCAGCCATTACCAGGCAAATTTTGATAATCTGCTAGTTTAAGGGAGGAAAATCACCTCTCTTTTTTGTTGTG TTGTGGGAAAGCCAAAAGCC
Downstream 100 bases:
>100_bases GGCCAAGTCCCCACCTCTCCGGCTAGCACCGTAAAGGGTTGATCGGGTTCCCCCAGGTCACTGAGTACCAGGTCGGCCCC CGTAAAATCTTGGTTAGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 393; Mature: 393
Protein sequence:
>393_residues MMKPKNSWWRSPKILWIKLCLIGSLLIGCAPVVPPAESNPRTFAPLSVEFLDEYWLPKTEFQGTTVGGLSALYYDAQTGD YYALSDDRSQFAPARFYTFDLDIDETGAIPQIQQLNLKGMTPLTTPDGETFAPGSLDPEGLVLSPRNTLFISSEGDTDAA IDPFVKEFDHEGRELTSLRIPQRFLTGDRQRGVRNNLGFESLAISAPSQAAVDPFRIFVAPESSLHQDTRSDNVGAPIRL LHYVINPIGEPVLIAEHLYPLEPAPQGTFSNGLVEMIALPQEGYFLSLERSYGLGGVGAKLFQVTIGNATDTARIESLAG NPETVVPMQKTLLLDLRQLGIGLDNLEGMTLGPRLADGSQSLLLISDDNFSTDQVNQLLLFRLSNSAAKVTSK
Sequences:
>Translated_393_residues MMKPKNSWWRSPKILWIKLCLIGSLLIGCAPVVPPAESNPRTFAPLSVEFLDEYWLPKTEFQGTTVGGLSALYYDAQTGD YYALSDDRSQFAPARFYTFDLDIDETGAIPQIQQLNLKGMTPLTTPDGETFAPGSLDPEGLVLSPRNTLFISSEGDTDAA IDPFVKEFDHEGRELTSLRIPQRFLTGDRQRGVRNNLGFESLAISAPSQAAVDPFRIFVAPESSLHQDTRSDNVGAPIRL LHYVINPIGEPVLIAEHLYPLEPAPQGTFSNGLVEMIALPQEGYFLSLERSYGLGGVGAKLFQVTIGNATDTARIESLAG NPETVVPMQKTLLLDLRQLGIGLDNLEGMTLGPRLADGSQSLLLISDDNFSTDQVNQLLLFRLSNSAAKVTSK >Mature_393_residues MMKPKNSWWRSPKILWIKLCLIGSLLIGCAPVVPPAESNPRTFAPLSVEFLDEYWLPKTEFQGTTVGGLSALYYDAQTGD YYALSDDRSQFAPARFYTFDLDIDETGAIPQIQQLNLKGMTPLTTPDGETFAPGSLDPEGLVLSPRNTLFISSEGDTDAA IDPFVKEFDHEGRELTSLRIPQRFLTGDRQRGVRNNLGFESLAISAPSQAAVDPFRIFVAPESSLHQDTRSDNVGAPIRL LHYVINPIGEPVLIAEHLYPLEPAPQGTFSNGLVEMIALPQEGYFLSLERSYGLGGVGAKLFQVTIGNATDTARIESLAG NPETVVPMQKTLLLDLRQLGIGLDNLEGMTLGPRLADGSQSLLLISDDNFSTDQVNQLLLFRLSNSAAKVTSK
Specific function: Unknown
COG id: COG4222
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42973; Mature: 42973
Theoretical pI: Translated: 4.42; Mature: 4.42
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMKPKNSWWRSPKILWIKLCLIGSLLIGCAPVVPPAESNPRTFAPLSVEFLDEYWLPKTE CCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEECCEEHHHHHHHCCCCCC FQGTTVGGLSALYYDAQTGDYYALSDDRSQFAPARFYTFDLDIDETGAIPQIQQLNLKGM CCCCCCCCCEEEEEECCCCCEEEECCCCHHCCCEEEEEEEECCCCCCCCCCCEECCCCCC TPLTTPDGETFAPGSLDPEGLVLSPRNTLFISSEGDTDAAIDPFVKEFDHEGRELTSLRI CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEC PQRFLTGDRQRGVRNNLGFESLAISAPSQAAVDPFRIFVAPESSLHQDTRSDNVGAPIRL CHHHHCCCHHCCHHHCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCHHHH LHYVINPIGEPVLIAEHLYPLEPAPQGTFSNGLVEMIALPQEGYFLSLERSYGLGGVGAK HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEE LFQVTIGNATDTARIESLAGNPETVVPMQKTLLLDLRQLGIGLDNLEGMTLGPRLADGSQ EEEEEECCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCEECCEECCCCC SLLLISDDNFSTDQVNQLLLFRLSNSAAKVTSK EEEEEECCCCCHHHHHEEEEEEECCCCCCCCCC >Mature Secondary Structure MMKPKNSWWRSPKILWIKLCLIGSLLIGCAPVVPPAESNPRTFAPLSVEFLDEYWLPKTE CCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCEECCEEHHHHHHHCCCCCC FQGTTVGGLSALYYDAQTGDYYALSDDRSQFAPARFYTFDLDIDETGAIPQIQQLNLKGM CCCCCCCCCEEEEEECCCCCEEEECCCCHHCCCEEEEEEEECCCCCCCCCCCEECCCCCC TPLTTPDGETFAPGSLDPEGLVLSPRNTLFISSEGDTDAAIDPFVKEFDHEGRELTSLRI CCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEC PQRFLTGDRQRGVRNNLGFESLAISAPSQAAVDPFRIFVAPESSLHQDTRSDNVGAPIRL CHHHHCCCHHCCHHHCCCCCCEEECCCCCCCCCEEEEEECCCHHHHHCCCCCCCCCHHHH LHYVINPIGEPVLIAEHLYPLEPAPQGTFSNGLVEMIALPQEGYFLSLERSYGLGGVGAK HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCEE LFQVTIGNATDTARIESLAGNPETVVPMQKTLLLDLRQLGIGLDNLEGMTLGPRLADGSQ EEEEEECCCCCHHHHHHHCCCCCEECCHHHHHHHHHHHHCCCCCCCCCCEECCEECCCCC SLLLISDDNFSTDQVNQLLLFRLSNSAAKVTSK EEEEEECCCCCHHHHHEEEEEEECCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA