| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is cbpA [C]
Identifier: 170078530
GI number: 170078530
Start: 2009390
End: 2010370
Strand: Reverse
Name: cbpA [C]
Synonym: SYNPCC7002_A1925
Alternate gene names: 170078530
Gene position: 2010370-2009390 (Counterclockwise)
Preceding gene: 170078531
Following gene: 170078520
Centisome position: 66.83
GC content: 48.11
Gene sequence:
>981_bases ATGGCAGCAACGGATTTTAAAGATTACTATTCCATCCTTGGGGTCAGTAAAAGTGCCTCTGCCGATGAAATTAAGAAAAA GTTTCGCAAGCTCGCTCTCCAATACCATCCTGATCGCAATCCAGGCAATGATGCCGCTGAAGCGAAGTTTAAGGAAATTA GTGAAGCATACGAAGTTCTTTCTGATCCAGAAAAACGGCAAAAATATGACCAGTTTGGCCAATACTGGCAACAGGCTGCT CGCGGGGGCGGTAGTCCCTATGGTGGCGCTGGCGTAAACGTCGATTTTGAGAACTTTAGTAACTTCGACTTTGGTAATTT TGGAAGCTTTGATGAATTTATTAACGATTTACTCGGACGAGCCGCAGCGAGTGCGGGGCCAAGAAGTACCGGGAATCCCT ACAGTGATTTTGGTTTCAATACAGCAGCGAGTGGTACAACCCAAGGCGCCGATCGAGAAGCAAATATTCAACTGACATTG TCCGAAGCCTTTCGCGGTGTTGAAAAACGGTTGAGCCTAGGCACAGAGACAATTACAGTCAAAATCCCAGCAGGAGTAAC CAACGGCAATAAAATCCGTGTCAAGGGCAAAGGTTCTCCTAGTGCCATGGGCGGCCAGAGGGGTGATCTGTATTTAATTG TTCAGCTCCAGGCCCATCATTTTTTCCACTTTGAAGGGGATAACTTAATCTGTACTTTACCCATTACCCCCGATGAGGCT GTGCTAGGGGCATCTGTCGCAGTCCCAACGCCGGATGGTATGGTGACGATGAAAATTCCCCCAGGGATTAAATCAGGACA ATCACTGCGACTCCGAGGCAAGGGCTGGCCCAAACCAAAGGGAAACCGCACGGATCAGCTTGTCAAAATAGAAATTGCTG TCCCTGCTGCACCCACCGAAGCGGAAAAAGAGTGTTATGAGAAGCTCCGGGCGCTTAATTCTTTTAAACCCCGCGATCGC CTCCAAAATGTAAGCCTCTAA
Upstream 100 bases:
>100_bases CTAACAACGCACCATCGGGAAAACCAAACCATTCTTGGCAGAGCAATTTGCTATTCTATGGTGTAGTGAATCATGACCCC CGCAAGGAGGCTTAATTTCG
Downstream 100 bases:
>100_bases CTAATCACCACCGAGGATTTTCTTAAGGGAATTAATCCCTTTTTTAATCCGCCGTGACACGGTAATAACACTCACTCCTA GTAGGTCAGCGGCCTCTTTT
Product: DnaJ domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MAATDFKDYYSILGVSKSASADEIKKKFRKLALQYHPDRNPGNDAAEAKFKEISEAYEVLSDPEKRQKYDQFGQYWQQAA RGGGSPYGGAGVNVDFENFSNFDFGNFGSFDEFINDLLGRAAASAGPRSTGNPYSDFGFNTAASGTTQGADREANIQLTL SEAFRGVEKRLSLGTETITVKIPAGVTNGNKIRVKGKGSPSAMGGQRGDLYLIVQLQAHHFFHFEGDNLICTLPITPDEA VLGASVAVPTPDGMVTMKIPPGIKSGQSLRLRGKGWPKPKGNRTDQLVKIEIAVPAAPTEAEKECYEKLRALNSFKPRDR LQNVSL
Sequences:
>Translated_326_residues MAATDFKDYYSILGVSKSASADEIKKKFRKLALQYHPDRNPGNDAAEAKFKEISEAYEVLSDPEKRQKYDQFGQYWQQAA RGGGSPYGGAGVNVDFENFSNFDFGNFGSFDEFINDLLGRAAASAGPRSTGNPYSDFGFNTAASGTTQGADREANIQLTL SEAFRGVEKRLSLGTETITVKIPAGVTNGNKIRVKGKGSPSAMGGQRGDLYLIVQLQAHHFFHFEGDNLICTLPITPDEA VLGASVAVPTPDGMVTMKIPPGIKSGQSLRLRGKGWPKPKGNRTDQLVKIEIAVPAAPTEAEKECYEKLRALNSFKPRDR LQNVSL >Mature_325_residues AATDFKDYYSILGVSKSASADEIKKKFRKLALQYHPDRNPGNDAAEAKFKEISEAYEVLSDPEKRQKYDQFGQYWQQAAR GGGSPYGGAGVNVDFENFSNFDFGNFGSFDEFINDLLGRAAASAGPRSTGNPYSDFGFNTAASGTTQGADREANIQLTLS EAFRGVEKRLSLGTETITVKIPAGVTNGNKIRVKGKGSPSAMGGQRGDLYLIVQLQAHHFFHFEGDNLICTLPITPDEAV LGASVAVPTPDGMVTMKIPPGIKSGQSLRLRGKGWPKPKGNRTDQLVKIEIAVPAAPTEAEKECYEKLRALNSFKPRDRL QNVSL
Specific function: DNA-Binding Protein That Preferentially Recognizes A Curved DNA Sequence. It Is Probably A Functional Analog Of Dnaj; Displays Overlapping Activities With Dnaj, But Functions Under Different Conditions, Probably Acting As A Molecular Chaperone In An Adapt
COG id: COG2214
COG function: function code O; DnaJ-class molecular chaperone
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI6631085, Length=344, Percent_Identity=32.2674418604651, Blast_Score=146, Evalue=3e-35, Organism=Homo sapiens, GI56549115, Length=348, Percent_Identity=29.8850574712644, Blast_Score=121, Evalue=8e-28, Organism=Homo sapiens, GI201862587, Length=348, Percent_Identity=29.8850574712644, Blast_Score=121, Evalue=9e-28, Organism=Homo sapiens, GI201862518, Length=348, Percent_Identity=29.8850574712644, Blast_Score=121, Evalue=9e-28, Organism=Homo sapiens, GI5453690, Length=349, Percent_Identity=26.9340974212034, Blast_Score=120, Evalue=2e-27, Organism=Homo sapiens, GI205360838, Length=341, Percent_Identity=27.5659824046921, Blast_Score=109, Evalue=4e-24, Organism=Homo sapiens, GI205360840, Length=341, Percent_Identity=27.5659824046921, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI7706495, Length=341, Percent_Identity=27.5659824046921, Blast_Score=104, Evalue=8e-23, Organism=Homo sapiens, GI194306642, Length=102, Percent_Identity=50.9803921568627, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI194306640, Length=102, Percent_Identity=50.9803921568627, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI39204547, Length=327, Percent_Identity=26.605504587156, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI27151736, Length=118, Percent_Identity=48.3050847457627, Blast_Score=93, Evalue=3e-19, Organism=Homo sapiens, GI88501736, Length=118, Percent_Identity=48.3050847457627, Blast_Score=93, Evalue=4e-19, Organism=Homo sapiens, GI21553335, Length=208, Percent_Identity=35.5769230769231, Blast_Score=92, Evalue=6e-19, Organism=Homo sapiens, GI9558755, Length=105, Percent_Identity=50.4761904761905, Blast_Score=92, Evalue=1e-18, Organism=Homo sapiens, GI47777312, Length=114, Percent_Identity=44.7368421052632, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI23503241, Length=81, Percent_Identity=55.5555555555556, Blast_Score=89, Evalue=6e-18, Organism=Homo sapiens, GI24308127, Length=139, Percent_Identity=39.568345323741, Blast_Score=88, Evalue=1e-17, Organism=Homo sapiens, GI194328758, Length=287, Percent_Identity=31.3588850174216, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI194328760, Length=287, Percent_Identity=31.3588850174216, Blast_Score=87, Evalue=3e-17, Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=59.0909090909091, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI4504511, Length=307, Percent_Identity=27.0358306188925, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=59.0909090909091, Blast_Score=86, Evalue=6e-17, Organism=Homo sapiens, GI45504382, Length=64, Percent_Identity=54.6875, Blast_Score=81, Evalue=1e-15, Organism=Homo sapiens, GI5031741, Length=74, Percent_Identity=56.7567567567568, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI29126218, Length=87, Percent_Identity=47.1264367816092, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI72534740, Length=130, Percent_Identity=39.2307692307692, Blast_Score=79, Evalue=8e-15, Organism=Homo sapiens, GI56687498, Length=75, Percent_Identity=54.6666666666667, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI22749377, Length=67, Percent_Identity=53.7313432835821, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI217035105, Length=73, Percent_Identity=46.5753424657534, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI221219056, Length=69, Percent_Identity=57.9710144927536, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI262206280, Length=69, Percent_Identity=57.9710144927536, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI68077168, Length=67, Percent_Identity=55.2238805970149, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI68077166, Length=67, Percent_Identity=55.2238805970149, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI21361912, Length=63, Percent_Identity=46.031746031746, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI157671935, Length=62, Percent_Identity=46.7741935483871, Blast_Score=66, Evalue=5e-11, Organism=Homo sapiens, GI27735107, Length=80, Percent_Identity=43.75, Blast_Score=65, Evalue=7e-11, Organism=Homo sapiens, GI8922563, Length=91, Percent_Identity=38.4615384615385, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1787235, Length=317, Percent_Identity=35.3312302839117, Blast_Score=178, Evalue=5e-46, Organism=Escherichia coli, GI1786197, Length=276, Percent_Identity=34.7826086956522, Blast_Score=110, Evalue=1e-25, Organism=Caenorhabditis elegans, GI17534355, Length=330, Percent_Identity=31.2121212121212, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17553098, Length=353, Percent_Identity=28.8951841359773, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17553096, Length=353, Percent_Identity=28.8951841359773, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17554644, Length=101, Percent_Identity=45.5445544554455, Blast_Score=85, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=61.9047619047619, Blast_Score=80, Evalue=2e-15, Organism=Caenorhabditis elegans, GI115532476, Length=74, Percent_Identity=47.2972972972973, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115532378, Length=115, Percent_Identity=39.1304347826087, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17538236, Length=67, Percent_Identity=55.2238805970149, Blast_Score=76, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17568643, Length=66, Percent_Identity=53.030303030303, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17554874, Length=72, Percent_Identity=43.0555555555556, Blast_Score=69, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17554900, Length=111, Percent_Identity=31.5315315315315, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17563890, Length=64, Percent_Identity=56.25, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324321, Length=360, Percent_Identity=29.4444444444444, Blast_Score=122, Evalue=1e-28, Organism=Saccharomyces cerevisiae, GI6324265, Length=66, Percent_Identity=65.1515151515152, Blast_Score=89, Evalue=9e-19, Organism=Saccharomyces cerevisiae, GI6323870, Length=67, Percent_Identity=55.2238805970149, Blast_Score=86, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6323119, Length=190, Percent_Identity=32.6315789473684, Blast_Score=82, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6322194, Length=82, Percent_Identity=47.5609756097561, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6320888, Length=117, Percent_Identity=41.025641025641, Blast_Score=79, Evalue=8e-16, Organism=Saccharomyces cerevisiae, GI6324103, Length=63, Percent_Identity=58.7301587301587, Blast_Score=73, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6323813, Length=101, Percent_Identity=43.5643564356436, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6324252, Length=64, Percent_Identity=48.4375, Blast_Score=70, Evalue=7e-13, Organism=Saccharomyces cerevisiae, GI6322388, Length=69, Percent_Identity=47.8260869565217, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI85726398, Length=353, Percent_Identity=30.8781869688385, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI24658562, Length=318, Percent_Identity=31.4465408805031, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24658555, Length=318, Percent_Identity=31.4465408805031, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI45549272, Length=363, Percent_Identity=28.3746556473829, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI45552813, Length=363, Percent_Identity=28.3746556473829, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI45552811, Length=363, Percent_Identity=28.3746556473829, Blast_Score=112, Evalue=5e-25, Organism=Drosophila melanogaster, GI19920464, Length=333, Percent_Identity=26.1261261261261, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI18858081, Length=347, Percent_Identity=29.1066282420749, Blast_Score=92, Evalue=4e-19, Organism=Drosophila melanogaster, GI24654066, Length=68, Percent_Identity=60.2941176470588, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654070, Length=68, Percent_Identity=60.2941176470588, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654068, Length=68, Percent_Identity=60.2941176470588, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI24654072, Length=68, Percent_Identity=60.2941176470588, Blast_Score=91, Evalue=1e-18, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=62.5, Blast_Score=86, Evalue=4e-17, Organism=Drosophila melanogaster, GI24646562, Length=90, Percent_Identity=52.2222222222222, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24646560, Length=90, Percent_Identity=52.2222222222222, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24646558, Length=90, Percent_Identity=52.2222222222222, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI24646556, Length=90, Percent_Identity=52.2222222222222, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI21357547, Length=90, Percent_Identity=52.2222222222222, Blast_Score=84, Evalue=2e-16, Organism=Drosophila melanogaster, GI17737735, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI28574723, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24668523, Length=64, Percent_Identity=56.25, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24668492, Length=68, Percent_Identity=51.4705882352941, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI20129487, Length=76, Percent_Identity=55.2631578947368, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI24584014, Length=76, Percent_Identity=55.2631578947368, Blast_Score=78, Evalue=9e-15, Organism=Drosophila melanogaster, GI17648033, Length=112, Percent_Identity=42.8571428571429, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24584630, Length=112, Percent_Identity=42.8571428571429, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24651436, Length=66, Percent_Identity=46.969696969697, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI21358273, Length=67, Percent_Identity=56.7164179104478, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI21358311, Length=66, Percent_Identity=46.969696969697, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24651439, Length=66, Percent_Identity=46.969696969697, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24762799, Length=101, Percent_Identity=38.6138613861386, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI21355911, Length=66, Percent_Identity=53.030303030303, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641698, Length=64, Percent_Identity=46.875, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24641696, Length=64, Percent_Identity=46.875, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24643180, Length=65, Percent_Identity=40, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C [H]
EC number: NA
Molecular weight: Translated: 35421; Mature: 35290
Theoretical pI: Translated: 8.91; Mature: 8.91
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAATDFKDYYSILGVSKSASADEIKKKFRKLALQYHPDRNPGNDAAEAKFKEISEAYEVL CCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SDPEKRQKYDQFGQYWQQAARGGGSPYGGAGVNVDFENFSNFDFGNFGSFDEFINDLLGR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH AAASAGPRSTGNPYSDFGFNTAASGTTQGADREANIQLTLSEAFRGVEKRLSLGTETITV HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEE KIPAGVTNGNKIRVKGKGSPSAMGGQRGDLYLIVQLQAHHFFHFEGDNLICTLPITPDEA EECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCEEEEEECCCEEEEEECCCCCH VLGASVAVPTPDGMVTMKIPPGIKSGQSLRLRGKGWPKPKGNRTDQLVKIEIAVPAAPTE HHCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCH AEKECYEKLRALNSFKPRDRLQNVSL HHHHHHHHHHHHHCCCCHHHHHCCCC >Mature Secondary Structure AATDFKDYYSILGVSKSASADEIKKKFRKLALQYHPDRNPGNDAAEAKFKEISEAYEVL CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH SDPEKRQKYDQFGQYWQQAARGGGSPYGGAGVNVDFENFSNFDFGNFGSFDEFINDLLGR CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH AAASAGPRSTGNPYSDFGFNTAASGTTQGADREANIQLTLSEAFRGVEKRLSLGTETITV HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHCCCEEEEE KIPAGVTNGNKIRVKGKGSPSAMGGQRGDLYLIVQLQAHHFFHFEGDNLICTLPITPDEA EECCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEECCEEEEEECCCEEEEEECCCCCH VLGASVAVPTPDGMVTMKIPPGIKSGQSLRLRGKGWPKPKGNRTDQLVKIEIAVPAAPTE HHCCEEECCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCH AEKECYEKLRALNSFKPRDRLQNVSL HHHHHHHHHHHHHCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]