| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
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The map label for this gene is ctpA [H]
Identifier: 170078450
GI number: 170078450
Start: 1933490
End: 1934875
Strand: Reverse
Name: ctpA [H]
Synonym: SYNPCC7002_A1844
Alternate gene names: 170078450
Gene position: 1934875-1933490 (Counterclockwise)
Preceding gene: 170078454
Following gene: 170078449
Centisome position: 64.32
GC content: 51.3
Gene sequence:
>1386_bases GTGATTTGCGCCATTCCTCCCCCCTTTTTTCTTCGCTTTCAGATCTCCATGAAAAAGATTGCTCTGTCTTTGCCTCGTTG CCCAGATACTTTTGTAAAGGGTGCCCTGAGAACGTTATCTGTTTTAGTTTTGTTGACTGTGCCCAGTTTGTCTCGTCCGG CGATCGCCGCGATGGAAGATAGTCCGAAAGCCATCGTTGATGAAATGTGGCAGATCGTCTACACAGAATCCGTTGCCAAA AATTTTGAGCCGGAATCTTGGCTAAAACTCCGCGAAGATTTATTAAGCCAGAACTACGATACCTATGACACGGCCTATCG TCAAATTCGTGGTGCCCTCAGAACCTTGGGAGACCCCTACACGCGATTCCTTGATCCAGAGGAGTTTGAAACCCTAACCA GCCAAACCACCGGCGAACTATCTGGCATTGGCATCCGCATGGAAATTAATGCAGAAACTGGGATCTTGACGGTGGTCGAT GTCCTCCCGGATTCTCCGGCAGAGGCGGCGGGAGTCCAAGCAGAAGATCAGATTATGCAGATCGATGGTCAGGTGACCGC TCTTTTGAGCCTAGAGCAGTCTTCGGAACTGATTCGGGGCCTAGAAGGGACTGAAGTGAATTTAAAAATTCGTCGCCGCG ACCAGTCTTCCCTAGATCTTGCGATTACGCGAGCAAAAATTGAATTGGCCACGGTGAACTACGGGGTACAAACCATCGGG GACGAAAAAGTTGGCTACATTCGCCTTGATGAGTTTAGTTCCCATGCCGCTGAGCAAATGTATAACGCGATCCAGGATCT AAAGGCGGAAACGGTTACGGGTTTTGTACTGGATCTCCGGGGAAATCCTGGGGGCTTACTCTACTCCAGCGTTGATATTG CCCGGATGTGGATGGAAGAAGGAGCAATCGTTCGCACAGTGGATCGCAAAGGGGGCGATCGCCAATTTAGCGCCAACCAA ACAGCGATTACCGATTTACCCCTCGTCGTGCTTGTGGATGAAAACTCTGCCAGTGCCAGCGAAATCTTAGCGGCGGCCCT CAAGGACAACCAACGGGCAACCCTGGTGGGGACTCGCACCTACGGCAAGGGCACCGTCCAATCAGTCCATGAATTATCCA ACGGTGCGGGCCTGGCAGTCACAATCTCCCGGTACTATCCCCCCAGTGGCATGAGTATCAATATGAATGGGGTTAGTCCT GACATTACCGTAGAACTAGATAATGAACAGTTCACGCAACTGCGTCTCGATCCGAGTTTGATCGGGACGAGTGCTGATCC CCAGTTTCTCAAGGCAGTCAATATTCTCCAGAACCAGCGCCTTAGTGAAACTCCAGGCAAACAAGCCCCCCTCAGCGCCC GCTCGTCTGGTGCCATCTCCAATTAA
Upstream 100 bases:
>100_bases GGGTCAAGCCCAGGGGTTTCCAGGGGGCTTTTTCCAACCGTTTTTCCGGTGGGGAAGTCAGAAGGAAAGTAGATTGTTGA CTTTGACCTGTCCCAATGGG
Downstream 100 bases:
>100_bases GCACCTCCCGCTGCTTTGATCGTCTGCAGTTCCCGTAGATGAGTAACCCAGAAACATTTGTTACAATCATTTACAATGCA ACCCATTCAACTGTAGGCGA
Product: putative carboxyl-terminal protease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 461; Mature: 461
Protein sequence:
>461_residues MICAIPPPFFLRFQISMKKIALSLPRCPDTFVKGALRTLSVLVLLTVPSLSRPAIAAMEDSPKAIVDEMWQIVYTESVAK NFEPESWLKLREDLLSQNYDTYDTAYRQIRGALRTLGDPYTRFLDPEEFETLTSQTTGELSGIGIRMEINAETGILTVVD VLPDSPAEAAGVQAEDQIMQIDGQVTALLSLEQSSELIRGLEGTEVNLKIRRRDQSSLDLAITRAKIELATVNYGVQTIG DEKVGYIRLDEFSSHAAEQMYNAIQDLKAETVTGFVLDLRGNPGGLLYSSVDIARMWMEEGAIVRTVDRKGGDRQFSANQ TAITDLPLVVLVDENSASASEILAAALKDNQRATLVGTRTYGKGTVQSVHELSNGAGLAVTISRYYPPSGMSINMNGVSP DITVELDNEQFTQLRLDPSLIGTSADPQFLKAVNILQNQRLSETPGKQAPLSARSSGAISN
Sequences:
>Translated_461_residues MICAIPPPFFLRFQISMKKIALSLPRCPDTFVKGALRTLSVLVLLTVPSLSRPAIAAMEDSPKAIVDEMWQIVYTESVAK NFEPESWLKLREDLLSQNYDTYDTAYRQIRGALRTLGDPYTRFLDPEEFETLTSQTTGELSGIGIRMEINAETGILTVVD VLPDSPAEAAGVQAEDQIMQIDGQVTALLSLEQSSELIRGLEGTEVNLKIRRRDQSSLDLAITRAKIELATVNYGVQTIG DEKVGYIRLDEFSSHAAEQMYNAIQDLKAETVTGFVLDLRGNPGGLLYSSVDIARMWMEEGAIVRTVDRKGGDRQFSANQ TAITDLPLVVLVDENSASASEILAAALKDNQRATLVGTRTYGKGTVQSVHELSNGAGLAVTISRYYPPSGMSINMNGVSP DITVELDNEQFTQLRLDPSLIGTSADPQFLKAVNILQNQRLSETPGKQAPLSARSSGAISN >Mature_461_residues MICAIPPPFFLRFQISMKKIALSLPRCPDTFVKGALRTLSVLVLLTVPSLSRPAIAAMEDSPKAIVDEMWQIVYTESVAK NFEPESWLKLREDLLSQNYDTYDTAYRQIRGALRTLGDPYTRFLDPEEFETLTSQTTGELSGIGIRMEINAETGILTVVD VLPDSPAEAAGVQAEDQIMQIDGQVTALLSLEQSSELIRGLEGTEVNLKIRRRDQSSLDLAITRAKIELATVNYGVQTIG DEKVGYIRLDEFSSHAAEQMYNAIQDLKAETVTGFVLDLRGNPGGLLYSSVDIARMWMEEGAIVRTVDRKGGDRQFSANQ TAITDLPLVVLVDENSASASEILAAALKDNQRATLVGTRTYGKGTVQSVHELSNGAGLAVTISRYYPPSGMSINMNGVSP DITVELDNEQFTQLRLDPSLIGTSADPQFLKAVNILQNQRLSETPGKQAPLSARSSGAISN
Specific function: Cleavage of the 16 C-terminal residues from the D1 precursor of photosystem II. May be involved in protection of the bacterium from thermal and osmotic stresses [H]
COG id: COG0793
COG function: function code M; Periplasmic protease
Gene ontology:
Cell location: Secreted (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PDZ (DHR) domain [H]
Homologues:
Organism=Escherichia coli, GI1788134, Length=316, Percent_Identity=30.379746835443, Blast_Score=130, Evalue=2e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001478 - InterPro: IPR005151 - InterPro: IPR004447 [H]
Pfam domain/function: PF00595 PDZ; PF03572 Peptidase_S41 [H]
EC number: =3.4.21.102 [H]
Molecular weight: Translated: 50351; Mature: 50351
Theoretical pI: Translated: 4.48; Mature: 4.48
Prosite motif: PS50106 PDZ
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MICAIPPPFFLRFQISMKKIALSLPRCPDTFVKGALRTLSVLVLLTVPSLSRPAIAAMED CEECCCCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCC SPKAIVDEMWQIVYTESVAKNFEPESWLKLREDLLSQNYDTYDTAYRQIRGALRTLGDPY CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH TRFLDPEEFETLTSQTTGELSGIGIRMEINAETGILTVVDVLPDSPAEAAGVQAEDQIMQ HHCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHCCCCCCCHHEE IDGQVTALLSLEQSSELIRGLEGTEVNLKIRRRDQSSLDLAITRAKIELATVNYGVQTIG ECCCEEEEEEEHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEECCCEECC DEKVGYIRLDEFSSHAAEQMYNAIQDLKAETVTGFVLDLRGNPGGLLYSSVDIARMWMEE CCCCEEEEECCHHHHHHHHHHHHHHHHCHHEEEEEEEEECCCCCCEEEEHHHHHHHHHHC GAIVRTVDRKGGDRQFSANQTAITDLPLVVLVDENSASASEILAAALKDNQRATLVGTRT CCEEEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECC YGKGTVQSVHELSNGAGLAVTISRYYPPSGMSINMNGVSPDITVELDNEQFTQLRLDPSL CCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEECHHH IGTSADPQFLKAVNILQNQRLSETPGKQAPLSARSSGAISN CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure MICAIPPPFFLRFQISMKKIALSLPRCPDTFVKGALRTLSVLVLLTVPSLSRPAIAAMED CEECCCCCEEEEEEEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCCCCCEEECCC SPKAIVDEMWQIVYTESVAKNFEPESWLKLREDLLSQNYDTYDTAYRQIRGALRTLGDPY CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHH TRFLDPEEFETLTSQTTGELSGIGIRMEINAETGILTVVDVLPDSPAEAAGVQAEDQIMQ HHCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCHHCCCCCCCHHEE IDGQVTALLSLEQSSELIRGLEGTEVNLKIRRRDQSSLDLAITRAKIELATVNYGVQTIG ECCCEEEEEEEHHHHHHHCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEEEEECCCEECC DEKVGYIRLDEFSSHAAEQMYNAIQDLKAETVTGFVLDLRGNPGGLLYSSVDIARMWMEE CCCCEEEEECCHHHHHHHHHHHHHHHHCHHEEEEEEEEECCCCCCEEEEHHHHHHHHHHC GAIVRTVDRKGGDRQFSANQTAITDLPLVVLVDENSASASEILAAALKDNQRATLVGTRT CCEEEEECCCCCCCCCCCCCCEEECCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECC YGKGTVQSVHELSNGAGLAVTISRYYPPSGMSINMNGVSPDITVELDNEQFTQLRLDPSL CCCHHHHHHHHHCCCCCEEEEEEEECCCCCCEEEECCCCCEEEEEECCCCEEEEEECHHH IGTSADPQFLKAVNILQNQRLSETPGKQAPLSARSSGAISN CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8034700; 8058761; 8590279; 8905231 [H]