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The map label for this gene is sufD [C]

Identifier: 170078418

GI number: 170078418

Start: 1900131

End: 1901489

Strand: Reverse

Name: sufD [C]

Synonym: SYNPCC7002_A1812

Alternate gene names: 170078418

Gene position: 1901489-1900131 (Counterclockwise)

Preceding gene: 170078419

Following gene: 170078417

Centisome position: 63.21

GC content: 52.76

Gene sequence:

>1359_bases
ATGTCTAGCGGTACCATGACAGCGGCGATCGCCTTTTCCCAGAGTCAACCGACAGAAGTCGATCCCAATCTGGAAAAATT
TCTCGGATTACTCGACCGAAGCCAATCAGCGGAATTTCAAGCCATTCGCGATCAAGGCCTTGAAAAAGTTCGCCAAGGAA
AATTCCCAAGCCGACGGGATGAAGCCTGGCGGGTAACGGATTTATCGGTGCTCAAACATACGACTTTCCAAGCAGCCCAA
CCGACAACCCCAACGGCGGCAGATTTAGATGTTTTTGCCCTGCCGGAAACAGCCAACAGTCGTTTGGTATTTGTGAATGG
CCACTATGCCCCCGACCAGTCCTGCGTTTCGGGATTACCTGACGGCGTTTTTGTCGGCAACTTCACGGCATTAGCGGCGG
ATCAAAAAGCGGCGATCGCCAAATATCTTGGCCAGCAGACCGAGCAACTGGATGTGTTTGCCGCCCTCAATGATGCAGGT
CTTGGGGATCTCGCCATTGTTTGGGTGCCGAAAAATACCGTTGTTGAACAGCCAATCCAACTGCTATTTGTCGGCAACGG
TGCGGATCAACCGACGGCTATGCAGTCCCGCTGTCTCGTGATTGCGGAAACGGGAGCCCAAGCTAATGTGGTGGAATATT
ACGGGGCGATCGCCCAGGGTTGCACCGATCAAGATACCCACCGCTATTTCAACAATGCTTTAACAGAAGTTTGGGTGCAG
ACCAATGCCCGCCTTAACCATGTGCGGGTACAACGGGAAGCTGGGGGCGCGATTCATCTCGGTAATACGGCGATCGCCCA
AGCCCAAGACAGCCATTACCAACTCACAGAAGTTAATTTTGGTGCCCGACTGAGTCGCCATACCCTGACCCTGACCCAAA
ACGGCCCCCAAACAGAAACCATTCTAAAGGGGTTAACCATGGTTGGCGCCGAACAACTCAGCGACACCCACACCGCCGTT
TATCTCCAGCATCCCTACGGCAGCGTCGATCAACTCCATAAATGCATTATTGACGATGCAGCCCGGTCTGTTTTCAACGG
CCAAATCCATGTGCCTCAGAAAGCACAAATGACTAATGCGGCCCAACTGAACCGTAATTTGCTGCTGTCTCCCAAGGCCA
AAGTCGATACCAAACCCGAACTGCAAATTACCGCTGATAACGTGAAATGTGCCCACGGCGCAACCGTCAGCCAACTGGAA
GCCGAGGAAATTTTCTACCTCCGCAGTCGCGGTCTCAATGACTATGATGCGCGCCATTTGCTGATTGATGCTTTTGCTGC
GGAAATTCTCGATACCGTGGCGATCGCCCATTTACAGCAGGCCCTTACGGGTTGTGTTGCCTGTCGCACCGTTGACTAA

Upstream 100 bases:

>100_bases
GCCGGATTGTGAAGAGTGGCGGTAAGGAACTTGCCCTGGAATTAGAAGCAACGGGCTATGATTTCCTCGATCAAGAACTG
GCTGCGGGGGTTGTGTAACG

Downstream 100 bases:

>100_bases
CTTGTAAATTGCCGCCCCAACTGTTCCCGCTTACCCATCCGACCCAGTGAATCCCCTATGATCACAACCCAACCGAAACC
CCTTGCCGAACAGGTTCGTG

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 451

Protein sequence:

>452_residues
MSSGTMTAAIAFSQSQPTEVDPNLEKFLGLLDRSQSAEFQAIRDQGLEKVRQGKFPSRRDEAWRVTDLSVLKHTTFQAAQ
PTTPTAADLDVFALPETANSRLVFVNGHYAPDQSCVSGLPDGVFVGNFTALAADQKAAIAKYLGQQTEQLDVFAALNDAG
LGDLAIVWVPKNTVVEQPIQLLFVGNGADQPTAMQSRCLVIAETGAQANVVEYYGAIAQGCTDQDTHRYFNNALTEVWVQ
TNARLNHVRVQREAGGAIHLGNTAIAQAQDSHYQLTEVNFGARLSRHTLTLTQNGPQTETILKGLTMVGAEQLSDTHTAV
YLQHPYGSVDQLHKCIIDDAARSVFNGQIHVPQKAQMTNAAQLNRNLLLSPKAKVDTKPELQITADNVKCAHGATVSQLE
AEEIFYLRSRGLNDYDARHLLIDAFAAEILDTVAIAHLQQALTGCVACRTVD

Sequences:

>Translated_452_residues
MSSGTMTAAIAFSQSQPTEVDPNLEKFLGLLDRSQSAEFQAIRDQGLEKVRQGKFPSRRDEAWRVTDLSVLKHTTFQAAQ
PTTPTAADLDVFALPETANSRLVFVNGHYAPDQSCVSGLPDGVFVGNFTALAADQKAAIAKYLGQQTEQLDVFAALNDAG
LGDLAIVWVPKNTVVEQPIQLLFVGNGADQPTAMQSRCLVIAETGAQANVVEYYGAIAQGCTDQDTHRYFNNALTEVWVQ
TNARLNHVRVQREAGGAIHLGNTAIAQAQDSHYQLTEVNFGARLSRHTLTLTQNGPQTETILKGLTMVGAEQLSDTHTAV
YLQHPYGSVDQLHKCIIDDAARSVFNGQIHVPQKAQMTNAAQLNRNLLLSPKAKVDTKPELQITADNVKCAHGATVSQLE
AEEIFYLRSRGLNDYDARHLLIDAFAAEILDTVAIAHLQQALTGCVACRTVD
>Mature_451_residues
SSGTMTAAIAFSQSQPTEVDPNLEKFLGLLDRSQSAEFQAIRDQGLEKVRQGKFPSRRDEAWRVTDLSVLKHTTFQAAQP
TTPTAADLDVFALPETANSRLVFVNGHYAPDQSCVSGLPDGVFVGNFTALAADQKAAIAKYLGQQTEQLDVFAALNDAGL
GDLAIVWVPKNTVVEQPIQLLFVGNGADQPTAMQSRCLVIAETGAQANVVEYYGAIAQGCTDQDTHRYFNNALTEVWVQT
NARLNHVRVQREAGGAIHLGNTAIAQAQDSHYQLTEVNFGARLSRHTLTLTQNGPQTETILKGLTMVGAEQLSDTHTAVY
LQHPYGSVDQLHKCIIDDAARSVFNGQIHVPQKAQMTNAAQLNRNLLLSPKAKVDTKPELQITADNVKCAHGATVSQLEA
EEIFYLRSRGLNDYDARHLLIDAFAAEILDTVAIAHLQQALTGCVACRTVD

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=402, Percent_Identity=31.8407960199005, Blast_Score=173, Evalue=3e-44,
Organism=Escherichia coli, GI87081955, Length=324, Percent_Identity=20.0617283950617, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 49104; Mature: 48972

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGTMTAAIAFSQSQPTEVDPNLEKFLGLLDRSQSAEFQAIRDQGLEKVRQGKFPSRRD
CCCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
EAWRVTDLSVLKHTTFQAAQPTTPTAADLDVFALPETANSRLVFVNGHYAPDQSCVSGLP
CCEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHCCC
DGVFVGNFTALAADQKAAIAKYLGQQTEQLDVFAALNDAGLGDLAIVWVPKNTVVEQPIQ
CCEEECCEEEECCCHHHHHHHHHCCCCHHEEEEEEECCCCCCCEEEEEECCCHHHHCCEE
LLFVGNGADQPTAMQSRCLVIAETGAQANVVEYYGAIAQGCTDQDTHRYFNNALTEVWVQ
EEEEECCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TNARLNHVRVQREAGGAIHLGNTAIAQAQDSHYQLTEVNFGARLSRHTLTLTQNGPQTET
CCCEEEEEEEEECCCCEEEECCCCEECCCCCCEEEEEECCCCEEEEEEEEEECCCCHHHH
ILKGLTMVGAEQLSDTHTAVYLQHPYGSVDQLHKCIIDDAARSVFNGQIHVPQKAQMTNA
HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEECCCHHHHCCH
AQLNRNLLLSPKAKVDTKPELQITADNVKCAHGATVSQLEAEEIFYLRSRGLNDYDARHL
HHHCCCEEECCCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
LIDAFAAEILDTVAIAHLQQALTGCVACRTVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC
>Mature Secondary Structure 
SSGTMTAAIAFSQSQPTEVDPNLEKFLGLLDRSQSAEFQAIRDQGLEKVRQGKFPSRRD
CCCCEEEEEEECCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
EAWRVTDLSVLKHTTFQAAQPTTPTAADLDVFALPETANSRLVFVNGHYAPDQSCVSGLP
CCEEEEHHHHHHHCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEECCCCCCHHHHHCCC
DGVFVGNFTALAADQKAAIAKYLGQQTEQLDVFAALNDAGLGDLAIVWVPKNTVVEQPIQ
CCEEECCEEEECCCHHHHHHHHHCCCCHHEEEEEEECCCCCCCEEEEEECCCHHHHCCEE
LLFVGNGADQPTAMQSRCLVIAETGAQANVVEYYGAIAQGCTDQDTHRYFNNALTEVWVQ
EEEEECCCCCCCHHHCCEEEEEECCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TNARLNHVRVQREAGGAIHLGNTAIAQAQDSHYQLTEVNFGARLSRHTLTLTQNGPQTET
CCCEEEEEEEEECCCCEEEECCCCEECCCCCCEEEEEECCCCEEEEEEEEEECCCCHHHH
ILKGLTMVGAEQLSDTHTAVYLQHPYGSVDQLHKCIIDDAARSVFNGQIHVPQKAQMTNA
HHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEECCCHHHHCCH
AQLNRNLLLSPKAKVDTKPELQITADNVKCAHGATVSQLEAEEIFYLRSRGLNDYDARHL
HHHCCCEEECCCCCCCCCCCEEEEECCEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
LIDAFAAEILDTVAIAHLQQALTGCVACRTVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]