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The map label for this gene is rbcL [H]

Identifier: 170078404

GI number: 170078404

Start: 1882749

End: 1884164

Strand: Reverse

Name: rbcL [H]

Synonym: SYNPCC7002_A1798

Alternate gene names: 170078404

Gene position: 1884164-1882749 (Counterclockwise)

Preceding gene: 170078405

Following gene: 170078403

Centisome position: 62.64

GC content: 53.04

Gene sequence:

>1416_bases
ATGGTTCAGACCAAATCTGCTGGGTTTAATGCCGGTGTACAGGACTACCGCCTGACTTACTACACCCCCGATTACACCCC
GAAAGATACCGACTTACTCGCTTGTTTCCGGATGACTCCCCAACCTGGAGTCCCCCCCGAAGAATGTGCTGCGGCTGTTG
CGGCTGAATCTTCTACCGGTACTTGGACCACTGTATGGACCGATGGTTTAACTGACCTCGACCGCTACAAGGGTCGTTGC
TACAATGTTGAACCCGTTCCCGGTGAAGACAACCAATATTTCTGTTTCGTTGCTTACCCCCTCGATCTGTTTGAAGAAGG
TTCTGTAACCAACGTTTTGACTTCCTTGGTTGGTAACGTATTCGGTTTTAAAGCGCTGCGTGCCCTGCGCCTCGAAGATA
TCCGCTTCCCCGTTGCGTTAATCAAAACTTACCAAGGGCCTCCCCACGGGATCACTGTAGAGCGTGACCTCCTCAACAAG
TATGGTCGTCCTCTCCTCGGTTGTACGATTAAGCCGAAGCTCGGTCTGTCTGCGAAGAACTACGGTCGTGCGGTTTATGA
ATGTCTCCGTGGTGGTCTTGACTTCACCAAAGATGACGAAAACATCAACTCTCAGCCTTTCATGCGTTGGCGCGATCGCT
TCCTGTTCGTTCAAGAAGCTATCGAAAAATCCCAAGCTGAAACCAACGAAGTTAAGGGTCACTACCTTAACGTCACCGCT
GGCACTTGCGAAGAAATGCTCAAGCGGGCTGAATTCGCTAAGGAAATCGGCACTCCCATCATCATGCACGACTTCTTAAC
TGGTGGTTTCACTGCGAATACTACCCTTGCGAAGTGGTGTCGTGATAACGGCGTTCTGCTCCACATCCACCGGGCAATGC
ACGCGGTAATCGACCGTCAGAAGAACCACGGTATTCACTTCCGCGTTCTCGCTAAGTGTCTCCGCCTCTCTGGTGGTGAC
CACCTCCACTCCGGTACGGTTGTTGGTAAGCTCGAAGGCGATCGCGCCGCCACCCTCGGTTTCGTAGACCTGATGCGTGA
AGACTACGTTGAAGAAGATCGTTCTCGCGGTGTATTCTTCACCCAAGACTACGCTTCTCTCCCCGGCACCATGCCTGTGG
CTTCCGGTGGTATCCACGTATGGCACATGCCTGCCCTCGTTGAAATCTTCGGCGACGATTCCTGCCTCCAGTTTGGTGGT
GGTACCCTCGGTCACCCCTGGGGTAACGCACCTGGTGCAACTGCAAACCGTGTTGCTCTGGAAGCTTGTGTTCAAGCTCG
TAACGAAGGTCGCAGCCTGGCCCGTGAAGGTAATGATGTCCTCCGTGAAGCAGGTAAGTGGTCGCCTGAATTGGCAGCCG
CCCTCGACCTGTGGAAGGAAATCAAGTTCGAATTCGATACCGTTGACACTCTCTAA

Upstream 100 bases:

>100_bases
AGCAGTTTTGCCAACGTAAGATTTTTGAAGTTTTCGACCAACAATACCGTTACTGGTATTTGTCTGTTAAAGATAAGCAT
TTTTGCTGGAGGAAAACCGC

Downstream 100 bases:

>100_bases
GCTCCTGATGAGCATCAGTGGATGGGGAAGTTTGTCACAATCTACCTATTCACTGATGATTTCCTCCCATGGAGTTTAAA
AAAGTTGCGAAGGAAACGGC

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit [H]

Number of amino acids: Translated: 471; Mature: 471

Protein sequence:

>471_residues
MVQTKSAGFNAGVQDYRLTYYTPDYTPKDTDLLACFRMTPQPGVPPEECAAAVAAESSTGTWTTVWTDGLTDLDRYKGRC
YNVEPVPGEDNQYFCFVAYPLDLFEEGSVTNVLTSLVGNVFGFKALRALRLEDIRFPVALIKTYQGPPHGITVERDLLNK
YGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQEAIEKSQAETNEVKGHYLNVTA
GTCEEMLKRAEFAKEIGTPIIMHDFLTGGFTANTTLAKWCRDNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKCLRLSGGD
HLHSGTVVGKLEGDRAATLGFVDLMREDYVEEDRSRGVFFTQDYASLPGTMPVASGGIHVWHMPALVEIFGDDSCLQFGG
GTLGHPWGNAPGATANRVALEACVQARNEGRSLAREGNDVLREAGKWSPELAAALDLWKEIKFEFDTVDTL

Sequences:

>Translated_471_residues
MVQTKSAGFNAGVQDYRLTYYTPDYTPKDTDLLACFRMTPQPGVPPEECAAAVAAESSTGTWTTVWTDGLTDLDRYKGRC
YNVEPVPGEDNQYFCFVAYPLDLFEEGSVTNVLTSLVGNVFGFKALRALRLEDIRFPVALIKTYQGPPHGITVERDLLNK
YGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQEAIEKSQAETNEVKGHYLNVTA
GTCEEMLKRAEFAKEIGTPIIMHDFLTGGFTANTTLAKWCRDNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKCLRLSGGD
HLHSGTVVGKLEGDRAATLGFVDLMREDYVEEDRSRGVFFTQDYASLPGTMPVASGGIHVWHMPALVEIFGDDSCLQFGG
GTLGHPWGNAPGATANRVALEACVQARNEGRSLAREGNDVLREAGKWSPELAAALDLWKEIKFEFDTVDTL
>Mature_471_residues
MVQTKSAGFNAGVQDYRLTYYTPDYTPKDTDLLACFRMTPQPGVPPEECAAAVAAESSTGTWTTVWTDGLTDLDRYKGRC
YNVEPVPGEDNQYFCFVAYPLDLFEEGSVTNVLTSLVGNVFGFKALRALRLEDIRFPVALIKTYQGPPHGITVERDLLNK
YGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQEAIEKSQAETNEVKGHYLNVTA
GTCEEMLKRAEFAKEIGTPIIMHDFLTGGFTANTTLAKWCRDNGVLLHIHRAMHAVIDRQKNHGIHFRVLAKCLRLSGGD
HLHSGTVVGKLEGDRAATLGFVDLMREDYVEEDRSRGVFFTQDYASLPGTMPVASGGIHVWHMPALVEIFGDDSCLQFGG
GTLGHPWGNAPGATANRVALEACVQARNEGRSLAREGNDVLREAGKWSPELAAALDLWKEIKFEFDTVDTL

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultan

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 52259; Mature: 52259

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVQTKSAGFNAGVQDYRLTYYTPDYTPKDTDLLACFRMTPQPGVPPEECAAAVAAESSTG
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCC
TWTTVWTDGLTDLDRYKGRCYNVEPVPGEDNQYFCFVAYPLDLFEEGSVTNVLTSLVGNV
CEEEEECCCCHHHHHHCCCEECCCCCCCCCCCEEEEEECCHHHHCCCCHHHHHHHHHHHH
FGFKALRALRLEDIRFPVALIKTYQGPPHGITVERDLLNKYGRPLLGCTIKPKLGLSAKN
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCHHH
YGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQEAIEKSQAETNEVKGHYLNVTA
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEH
GTCEEMLKRAEFAKEIGTPIIMHDFLTGGFTANTTLAKWCRDNGVLLHIHRAMHAVIDRQ
HHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHH
KNHGIHFRVLAKCLRLSGGDHLHSGTVVGKLEGDRAATLGFVDLMREDYVEEDRSRGVFF
CCCCCHHHHHHHHHHCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE
TQDYASLPGTMPVASGGIHVWHMPALVEIFGDDSCLQFGGGTLGHPWGNAPGATANRVAL
ECHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHECCCCCCCCCCCCCCCCCHHHHHH
EACVQARNEGRSLAREGNDVLREAGKWSPELAAALDLWKEIKFEFDTVDTL
HHHHHHHHCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MVQTKSAGFNAGVQDYRLTYYTPDYTPKDTDLLACFRMTPQPGVPPEECAAAVAAESSTG
CCCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCC
TWTTVWTDGLTDLDRYKGRCYNVEPVPGEDNQYFCFVAYPLDLFEEGSVTNVLTSLVGNV
CEEEEECCCCHHHHHHCCCEECCCCCCCCCCCEEEEEECCHHHHCCCCHHHHHHHHHHHH
FGFKALRALRLEDIRFPVALIKTYQGPPHGITVERDLLNKYGRPLLGCTIKPKLGLSAKN
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEHHHHHHCCCCEEEEEECCCCCCCHHH
YGRAVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVQEAIEKSQAETNEVKGHYLNVTA
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEH
GTCEEMLKRAEFAKEIGTPIIMHDFLTGGFTANTTLAKWCRDNGVLLHIHRAMHAVIDRQ
HHHHHHHHHHHHHHHHCCCEEEHHHHCCCCCCCHHHHHHHCCCCEEEEHHHHHHHHHHHH
KNHGIHFRVLAKCLRLSGGDHLHSGTVVGKLEGDRAATLGFVDLMREDYVEEDRSRGVFF
CCCCCHHHHHHHHHHCCCCCEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCEEE
TQDYASLPGTMPVASGGIHVWHMPALVEIFGDDSCLQFGGGTLGHPWGNAPGATANRVAL
ECHHHHCCCCCCCCCCCEEEEEHHHHHHHHCCCCHHECCCCCCCCCCCCCCCCCHHHHHH
EACVQARNEGRSLAREGNDVLREAGKWSPELAAALDLWKEIKFEFDTVDTL
HHHHHHHHCCHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA