| Definition | Synechococcus sp. PCC 7002 chromosome, complete genome. |
|---|---|
| Accession | NC_010475 |
| Length | 3,008,047 |
Click here to switch to the map view.
The map label for this gene is 170078376
Identifier: 170078376
GI number: 170078376
Start: 1854772
End: 1855749
Strand: Direct
Name: 170078376
Synonym: SYNPCC7002_A1769
Alternate gene names: NA
Gene position: 1854772-1855749 (Clockwise)
Preceding gene: 170078375
Following gene: 170078377
Centisome position: 61.66
GC content: 47.85
Gene sequence:
>978_bases ATGTCCCGCCAATTAGAGCGCCTACTGGAAATTGATCGCCTGATCCGTTCAAGAGAGCGGCAAACACAAGTGAGTCTTGC TCAGACCTTGGAAGTTTCAGAAAGAACAATTCGTAATGATGTTAATTTTTTGCGAGATCGCTATGATGCCCCGCTGGAGT ACAACAGAAATCAGGGTTGGTACTATACCGACTCTAATTGGCGATTGCCCAGTACTCCGGTGACCCAAGGGGAACTTTTT GCCCTCACCCTCGGAGCAAGGATGCTGGAATCTTATTCAGGTTCTATTTATCAAATTCAATTGCGGGAAACTATTGAGCG AATTGCAAAACGTTTACCAGAACAGAGTGTGATTAATCTGCGACAGTTGGCAGAGGAACGAGTTCACTTCCGCGTTGGGG GAGAAATTCAACTAAATCCTGAGATTTGGCAAGCTCTCATTGAAGCCAGTGAGCGATCGCAGTCGGTGGTGATGCACTAT TTTTCGCCGAAGCGTCGGGAAGTGTCAGAGCGTGGTTTTGATCCTTATGTTTTGGACATTTACCGAGCGAGTAATGCCTA TGTGTGGGGTTATTGCCATTTACGGAACGAGGTTAGGCAATTTCGGATTGACCGGATTCGGAAGCTTGAACCCACAGGGC AAACCTTTGAGCGGCGGGAATTCGATTTGCAGGAGAAGCTGAAAAGCAGTTTTCAGTACGAGGTGGGTGGCAAAACCTAT GATGTAGTGATCACCTTTAATGCTCAGACGGCTCCCTATATTACGGAACGGCAATGGCATAGCACCCAAAGGATTGAAAC CCATGCTGATGGGTCGATTACGCTGCGTTTTACGGCTTCGGGCTTGAACGATATGAAACGCTGGATTCTCGGTTATGGCA GAGGGGCGATCGCCAAATCTCCTCCGGAACTGGTGAATATGCTGGAACGGGAAACAGCACAGATGGCACGGCAAAACGAA ACAGGAGAATTTAAGTAG
Upstream 100 bases:
>100_bases TGATGTGTCTTTTAGTCACGCAATAAATATTTTTTGACCCGGTAAGTCTTTTGACGGGTTTTATCTTTATGATGAAGAGC GTAGTCGATTTAGTGACACT
Downstream 100 bases:
>100_bases ATGAATTTTTTGGAAGTGCAGTTTGAGCTGCGGGGTAAAACGCTGCCTGCGGATCATGGTTACAGCCTCTATTCTGGGAT TAAACAGATTTGGCAACAGT
Product: hypothetical protein
Products: NA
Alternate protein names: Transcriptional Regulator; Transcriptional Regulator-Like Protein; Regulatory Protein DeoR; GntR Family Transcriptional Regulator; Transcriptional Regulator Protein-Like Protein; HTH Domain Protein; Helix-Turn-Helix Transcriptional Regulator; Transcriptional Regulator-Like; DeoR Family Regulatory Protein; HTH Domain Family; Transcriptional Regulator Protein
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MSRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGWYYTDSNWRLPSTPVTQGELF ALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINLRQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHY FSPKRREVSERGFDPYVLDIYRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKSPPELVNMLERETAQMARQNE TGEFK
Sequences:
>Translated_325_residues MSRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGWYYTDSNWRLPSTPVTQGELF ALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINLRQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHY FSPKRREVSERGFDPYVLDIYRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKSPPELVNMLERETAQMARQNE TGEFK >Mature_324_residues SRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGWYYTDSNWRLPSTPVTQGELFA LTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINLRQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHYF SPKRREVSERGFDPYVLDIYRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTYD VVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKSPPELVNMLERETAQMARQNET GEFK
Specific function: Unknown
COG id: COG2378
COG function: function code K; Predicted transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 38315; Mature: 38184
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: PS00894 HTH_DEOR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCE YYTDSNWRLPSTPVTQGELFALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINL EEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHH RQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHYFSPKRREVSERGFDPYVLDI HHHHHHHHEEEECCEEEECHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHCCCCCEEEEE YRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY EECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCEEEECCEEE DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKS EEEEEECCCCCCCCCCHHHCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC PPELVNMLERETAQMARQNETGEFK CHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure SRQLERLLEIDRLIRSRERQTQVSLAQTLEVSERTIRNDVNFLRDRYDAPLEYNRNQGW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCE YYTDSNWRLPSTPVTQGELFALTLGARMLESYSGSIYQIQLRETIERIAKRLPEQSVINL EEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHCCCEEEEEHHHHHHHHHHHCCHHHHHHH RQLAEERVHFRVGGEIQLNPEIWQALIEASERSQSVVMHYFSPKRREVSERGFDPYVLDI HHHHHHHHEEEECCEEEECHHHHHHHHHHHCCCHHEEHHHCCCHHHHHHHCCCCCEEEEE YRASNAYVWGYCHLRNEVRQFRIDRIRKLEPTGQTFERREFDLQEKLKSSFQYEVGGKTY EECCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHHHHCCEEEECCEEE DVVITFNAQTAPYITERQWHSTQRIETHADGSITLRFTASGLNDMKRWILGYGRGAIAKS EEEEEECCCCCCCCCCHHHCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCC PPELVNMLERETAQMARQNETGEFK CHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA