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The map label for this gene is ychF [H]

Identifier: 170078335

GI number: 170078335

Start: 1815589

End: 1816683

Strand: Direct

Name: ychF [H]

Synonym: SYNPCC7002_A1728

Alternate gene names: 170078335

Gene position: 1815589-1816683 (Clockwise)

Preceding gene: 170078334

Following gene: 170078336

Centisome position: 60.36

GC content: 51.69

Gene sequence:

>1095_bases
ATGCTACGAGCCGGAATCGTCGGACTACCCAACGTTGGAAAATCCACCCTTTTCAATGCCCTCTGTGAGAATGCCAAAGC
AGACGCGGCTAACTTTCCTTTTTGTACCATCGAACCCAATGTGGGGGTGGTGGCGGTTCCCGATGGGCGTCTTGATGTCC
TCGCCGACATTTCCAAATCCGCCAAAATTGTCCCCACCCGCATCGAATTTGTCGATATCGCTGGCTTGGTAAAAGGGGCG
AGCCAAGGGGAAGGTTTGGGCAATCAGTTCCTCGCTAATATCCGTGAAGTGGATGCGATCGTCCATGTAGTGCGTTGTTT
CGACGACGATGACATTATCCATGTGTCCGGTTCCGTTGATCCGATCCGCGACATTGAAGTGATTAGCCTAGAGTTGATCC
TCGCTGATTTGGCCCAGGTGGAAAAACGTCTTGATCGCGCCCGCAAACAAGCCAAGAGTCGCGCTAAGGAAGCTCTGTTG
GAAGTGGCCGTTTTAGAAAAGATTTTGCCCGTCCTCGAAGATGCTCGTCCAGCCCGGGAAGTGGAATTGGATGAAGAGGA
AGAACTGGCGATTAAAGCCCTTGGTTTGCTGACCCGTAAGCCTGTAATCTATGCGACCAACGTTTCCGAGGAAGATCTTG
CCGACGGTAATGCTTGGGTAGAACAGGTCAGGGAGTTAGCCCAGCAGGAAAATGCCCAGGTGGTCGTGGTTTCGGCCCAA
GTAGAAGCAGAATTAGTGGAATTAGACGCCGCTGAAAAGAAAGATTTCTTGGAATCTCTCGGCGTAGAAGAAGGGGGGTT
GCAATCTCTGATTCGTGCCACCTATGAACTGTTAGGTTTACGAACCTATTTCACCACTGGCCCTGAAGAAACCCGCGCTT
GGACAATCCATGTGGGCATGAAAGCACCCCAGGCCGCCGGGGTAATTCACACAGACTTTGAACGGGGCTTTATCCGGGCA
GAAACGGTCGCCTATCAAGATTTGGTGGATTGTGGGGCAATGCCTGCGGCTAAGGAAAAGGGCCTAGTGCGTGCGGAAGG
AAAAGAATACTTAGTCCAGGAAGGGGATGTGATGTTGTTCCGGTTTAATGTCTAG

Upstream 100 bases:

>100_bases
AGATTATTGCCACCGCTGCCGCCGATAAAACCATTAAACTCTGGCGATTCGGGATACAATGACCACCGAGCAAAAACAAG
AATTTAAAACATAAAGCCCC

Downstream 100 bases:

>100_bases
GGCAATGGTTAAGGTTTGGGGAAAAGTGCTTGTTCTGGGTTTATTGATTTGGTTTTTGGGGTGGAGTCCGGTTTGGGCCG
AATCCCTAGGCGATCGCCTT

Product: GTP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MLRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKSAKIVPTRIEFVDIAGLVKGA
SQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDPIRDIEVISLELILADLAQVEKRLDRARKQAKSRAKEALL
EVAVLEKILPVLEDARPAREVELDEEEELAIKALGLLTRKPVIYATNVSEEDLADGNAWVEQVRELAQQENAQVVVVSAQ
VEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWTIHVGMKAPQAAGVIHTDFERGFIRA
ETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEGDVMLFRFNV

Sequences:

>Translated_364_residues
MLRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKSAKIVPTRIEFVDIAGLVKGA
SQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDPIRDIEVISLELILADLAQVEKRLDRARKQAKSRAKEALL
EVAVLEKILPVLEDARPAREVELDEEEELAIKALGLLTRKPVIYATNVSEEDLADGNAWVEQVRELAQQENAQVVVVSAQ
VEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWTIHVGMKAPQAAGVIHTDFERGFIRA
ETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEGDVMLFRFNV
>Mature_364_residues
MLRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKSAKIVPTRIEFVDIAGLVKGA
SQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDPIRDIEVISLELILADLAQVEKRLDRARKQAKSRAKEALL
EVAVLEKILPVLEDARPAREVELDEEEELAIKALGLLTRKPVIYATNVSEEDLADGNAWVEQVRELAQQENAQVVVVSAQ
VEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWTIHVGMKAPQAAGVIHTDFERGFIRA
ETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEGDVMLFRFNV

Specific function: GTP-dependent nucleic acid-binding protein which may act as a translation factor [H]

COG id: COG0012

COG function: function code J; Predicted GTPase, probable translation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI58761500, Length=370, Percent_Identity=45.4054054054054, Blast_Score=306, Evalue=2e-83,
Organism=Homo sapiens, GI58761502, Length=199, Percent_Identity=40.2010050251256, Blast_Score=148, Evalue=8e-36,
Organism=Escherichia coli, GI1787454, Length=363, Percent_Identity=58.9531680440771, Blast_Score=421, Evalue=1e-119,
Organism=Escherichia coli, GI1789574, Length=142, Percent_Identity=32.3943661971831, Blast_Score=68, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17509631, Length=366, Percent_Identity=42.896174863388, Blast_Score=302, Evalue=2e-82,
Organism=Saccharomyces cerevisiae, GI6319499, Length=372, Percent_Identity=40.8602150537634, Blast_Score=255, Evalue=7e-69,
Organism=Saccharomyces cerevisiae, GI6321773, Length=379, Percent_Identity=36.1477572559367, Blast_Score=219, Evalue=4e-58,
Organism=Saccharomyces cerevisiae, GI6321649, Length=276, Percent_Identity=30.7971014492754, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI24640873, Length=369, Percent_Identity=44.1734417344173, Blast_Score=295, Evalue=3e-80,
Organism=Drosophila melanogaster, GI24640877, Length=369, Percent_Identity=44.1734417344173, Blast_Score=295, Evalue=3e-80,
Organism=Drosophila melanogaster, GI24640875, Length=369, Percent_Identity=44.1734417344173, Blast_Score=295, Evalue=3e-80,
Organism=Drosophila melanogaster, GI24640879, Length=327, Percent_Identity=41.2844036697248, Blast_Score=239, Evalue=2e-63,

Paralogues:

None

Copy number: 120 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012675
- InterPro:   IPR004396
- InterPro:   IPR013029
- InterPro:   IPR006073
- InterPro:   IPR002917
- InterPro:   IPR012676
- InterPro:   IPR023192 [H]

Pfam domain/function: PF01926 MMR_HSR1; PF06071 YchF-GTPase_C [H]

EC number: NA

Molecular weight: Translated: 39697; Mature: 39697

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKS
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCCHHHHHCCCC
AKIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVD
CCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
PIRDIEVISLELILADLAQVEKRLDRARKQAKSRAKEALLEVAVLEKILPVLEDARPARE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VELDEEEELAIKALGLLTRKPVIYATNVSEEDLADGNAWVEQVRELAQQENAQVVVVSAQ
CCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEC
VEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWTIHVGM
CCHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECC
KAPQAAGVIHTDFERGFIRAETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEGDVMLF
CCCCCCCCEEECHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEECCCHHHEECCCEEEE
RFNV
EECC
>Mature Secondary Structure
MLRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKS
CCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCEEEECCCCCEEEECCCCCHHHHHCCCC
AKIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVD
CCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC
PIRDIEVISLELILADLAQVEKRLDRARKQAKSRAKEALLEVAVLEKILPVLEDARPARE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
VELDEEEELAIKALGLLTRKPVIYATNVSEEDLADGNAWVEQVRELAQQENAQVVVVSAQ
CCCCCHHHHHHHHHHHHHCCCEEEECCCCHHHCCCCHHHHHHHHHHHHHCCCEEEEEEEC
VEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWTIHVGM
CCHHHHHHCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEEEEEECC
KAPQAAGVIHTDFERGFIRAETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEGDVMLF
CCCCCCCCEEECHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEECCCHHHEECCCEEEE
RFNV
EECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377 [H]